Browse Element(s) Details


Os.23181.1.S1_at

Description gb:AK106990.1
DB_XREF= gi:32992199
TID=Os.23181.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative spore coat protein (P0037C04.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A08, full insert sequence.
FL= gb:AK106990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0353011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed
LOC_Os01g03570Os.26958.1.S1_at11/111+1443664..1447275X1, putative, expressed
LOC_Os01g03580NANA1+1448279..1451484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g03590NANA1+1454749..1456784transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23181.1.S1_at--706--9731Chr01:1432465..1432489 (25 bp)
TCAAGGGCTGCATGGCGAAGCTCAA
LOC_Os01g03530
Os.23181.1.S1_at--407--2751Chr01:1432566..1432590 (25 bp)
AAGAACGTGGTCAAGATCGCGCCGG
LOC_Os01g03530
Os.23181.1.S1_at--291--3231Chr01:1432613..1432637 (25 bp)
CAAGTTCTTCATGGTCGACAGCGGC
LOC_Os01g03530
Os.23181.1.S1_at--10--8891Chr01:1433256..1433280 (25 bp)
TGAGGACAACGCCATGATTCGCCCG
LOC_Os01g03530
Os.23181.1.S1_at--357--6571Chr01:1433271..1433295 (25 bp)
GATTCGCCCGCTAAAGCTGATCAAA
LOC_Os01g03530
Os.23181.1.S1_at--787--1451Chr01:1433332..1433356 (25 bp)
AGAAGCAATCCAGTACCAAGTGTAA
LOC_Os01g03530
Os.23181.1.S1_at--442--1691Chr01:1433346..1433370 (25 bp)
ACCAAGTGTAAATGGGATCCCTGAA
LOC_Os01g03530
Os.23181.1.S1_at--451--4731Chr01:1433442..1433466 (25 bp)
GCTGTAGGCCATGTGTTTGTACTTT
LOC_Os01g03530
Os.23181.1.S1_at--329--8731Chr01:1433527..1433551 (25 bp)
TGTCATAGTTGTCCTTCCTTTTTCA
LOC_Os01g03530
Os.23181.1.S1_at--741--6731Chr01:1433556..1433580 (25 bp)
GTTCTTCATGTATTCTTGACTCTGC
LOC_Os01g03530
Os.23181.1.S1_at--849--6871Chr01:1433565..1433589 (25 bp)
GTATTCTTGACTCTGCTAAATGCCA
LOC_Os01g03530
Target Sequence 
TCAAGGGCTGCATGGCGAAGCTCAACGACGCGGTGAGGTGCAACGTGAGCCGGCACGCCGTCGGCGAGGAGGTGGCGGTG
CCGGAGCACGAGAAGGGGTGGAAGAACGTGGTCAAGATCGCGCCGGGGTACATGACGACGATCGTCGTCAAGTTCTTCAT
GGTCGACAGCGGCAAGCCGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACATTCTGGNTCATG
AGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAATGAAGACATTTTTAAGGANATGATGATCAGAGTACAAGAAGC
AATCCAGTACCAAGTGTAAATGGGATCCCTGAACAGAGAAAAGCAATGAGATTATAATTTATTTTAGAAATTGTTTAAGA
TGTTGTATCACAATAACTTAATAAGCTGTAGGCCATGTGTTTGTACTTTGTAGGTAAAGTAAGCATTTGTTTTAGGAGAC
AGAAAGCAAAAAACTATNTNNCTCCTAAATTTGTCATAGTTGTCCTTCCTTTTTCACTCTGTTCTTCATGTATTCTTGAC
TCTGCTAAATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis