Browse Element(s) Details


Os.45460.2.S1_x_at

Description gb:NM_184186.1
DB_XREF= gi:34895463
GEN=P0037C04.28
TID=Os.45460.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0037C04.28 (P0037C04.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0037C04.28 (P0037C04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g035005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_x_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03480OsAffx.23101.2.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.2.S1_s_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.1.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03490Os.962.1.S1_at11/111+1401617..1403989heavy metal-associated domain containing protein, expressed
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45460.2.S1_x_at--876--6311Chr01:1408391..1408415 (25 bp)
GATGACATTCCTACTGATGCACACC
LOC_Os01g03500
Os.45460.2.S1_x_at--736--4211Chr01:1408368..1408392 (25 bp)
CCCCAATGAGCGCAGTGATTCTTAT
LOC_Os01g03500
Os.45460.2.S1_x_at--958--2871Chr01:1408198..1408222 (25 bp)
AAGGGCCTGATGGACGCTACATTAA
LOC_Os01g03500
Os.45460.2.S1_x_at--304--6511Chr01:1408148..1408172 (25 bp)
GATATCCTTATTGGTGCATTTGAGA
LOC_Os01g03500
Os.45460.2.S1_x_at--484--3231Chr01:1408043..1408067 (25 bp)
CAAGCACGCATGAGGGACCCGAATT
LOC_Os01g03500
Os.45460.2.S1_x_at--235--6831Chr01:1405904..1405928 (25 bp)
GTTTCTTGGTAGTTGCAAGCACGAA
NONE
Os.45460.2.S1_x_at--536--1851Chr01:1405884..1405908 (25 bp)
ACGAATTCACTGTGCTTCGCACCTG
NONE
Os.45460.2.S1_x_at--527--9351Chr01:1405868..1405892 (25 bp)
TCGCACCTGCGGGTCAAAAGACATG
NONE
Os.45460.2.S1_x_at--947--4191Chr01:1404270..1404289 (20 bp)
CCCCTGTTCGCATTTCGCAATGGAT
NONE
Os.45460.2.S1_x_at--539--10191Chr01:1404258..1404282 (25 bp)
TTTCGCAATGGATCGTGGGTGTTAC
NONE
Os.45460.2.S1_x_at--745--9411Chr01:1404186..1404270 (25 bp)
TCGTGGGTGTTACAGTTTTCACCAA
NONE
Target Sequence 
GATGACATTCCTACTGATGCACACCCCAATGAGCGCAGTGATTCTTATATAGACAAGGTGTTTGAATTTGATGAAGCACC
TAAATATCGCACAATCTCAGAGTTGTTGAAAGCTGAGAAGGAGCCGCCAGAGCTTTCTCCTGGAAAGCAAGCAAGAAAAC
TTGCTGTAGAAAATGCTCTGAAGAAGTTGAAGAAAGGGCCTGATGGACGCTACATTAATGTGTTTGATGTTGTCACTGAT
ATAGATATCCTTATTGGTGCATTTGAGAACATTGTCTCAGGACCAGAATATGCAGAGCTACGGGAGGGTGGACCAAAGAA
GCTTAATATACAGTTCTTTAAGGATATACAAGCACGCATGAGGGACCCGAATTTCAAATTTTCTCCAGAGTTAAAGCTAA
AGCCAAAGAGGGCCAAGTTTCTTGGTAGTTGCAAGCACGAATTCACTGTGCTTCGCACCTGCGGGTCAAAAGACATGCCC
CCATGGTGTGCGTGCTGCACGCCCCCTGTTCGCATTTCGCAATGGATCGTGGGTGTTACAGTTTTCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45460.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis