Browse Element(s) Details


OsAffx.23624.1.S1_at

Description tigr:9629.m03987
TID=OsAffx.23624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4168011/11retrotransposon protein, putative, unclassified
LOC_Os01g034521/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23624.1.S1_at--895--5851Chr01:23919587..23919611 (25 bp)
GAGCCGGAGACAGCGGCTACATCGT
LOC_Os01g41680
OsAffx.23624.1.S1_at--453--3731Chr01:23919571..23919595 (25 bp)
CTACATCGTCGGTGGGAGAGGCAAT
LOC_Os01g41680
OsAffx.23624.1.S1_at--393--4431Chr01:23919545..23919569 (25 bp)
GCCATGCATGGCCAGAATCAGCTAG
LOC_Os01g41680
OsAffx.23624.1.S1_at--1044--24516Chr12:9236645..9236716 (25 bp)
AACAAGTTGCAACTTTGCCTGGAGC
NONE
OsAffx.23624.1.S1_at--1096--2033Chr01:17956428..17956571 (25 bp)
ACTTTGCCTGGAGCAATTTCAGGAT
NONE
OsAffx.23624.1.S1_at--604--10332Chr12:24568010..24568029 (20 bp)
TTTCAGGATGGGTGACTGACCGGAA
NONE
OsAffx.23624.1.S1_at--200--1851Chr01:23918824..23918848 (25 bp)
ACGAATGAGGACAAGGTGTGCTGAA
LOC_Os01g41680
OsAffx.23624.1.S1_at--242--7471Chr01:23918809..23918833 (25 bp)
GTGTGCTGAAAAGACCTTGTGTTGG
LOC_Os01g41680
OsAffx.23624.1.S1_at--99--5531Chr01:23918370..23918785 (25 bp)
GAAAAGCTGCCAGTTAAGCCGATCT
LOC_Os01g41680
OsAffx.23624.1.S1_at--968--4771Chr01:23918365..23918780 (25 bp)
GCTGCCAGTTAAGCCGATCTCCAAA
LOC_Os01g41680
OsAffx.23624.1.S1_at--930--10113Chr11:23494335..23494358 (24 bp)
AGGTTAAGCATGCTTGGCCTGAAGC
NONE
Target Sequence 
GAGCCGGAGACAGCGGCTACATCGTCGGTGGGAGAGGCAATGGCCATGCATGGCCAGAATCAGCTAGGCGGGGAGGCGGG
AGAGAACAGCGGTGGGGAACTCAGGGCTTAATAGGATTAATAGAATACTCATACCAACAAGTTGCAACTTTGCCTGGAGC
AATTTCAGGATGGGTGACTGACCGGAAAATTCTTCCCGGGTGCACACGAATGAGGACAAGGTGTGCTGAAAAGACCTTGT
GTTGGTCTGTGAGGGCATCTATGTCCAAGAAAAGCTGCCAGTTAAGCCGATCTCCAAAGAACTCTAAGGTTAAGCATGCT
TGGCCTGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis