Browse Element(s) Details


OsAffx.26442.1.S1_x_at

Description gb:NM_192634.1
DB_XREF= gi:34912351
GEN=P0518F01.11
TID=OsAffx.26442.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0518F01.11 (P0518F01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4167011/11G-patch domain containing protein
LOC_Os04g433244/11G-patch domain containing protein
LOC_Os04g424603/11G-patch domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26442.1.S1_x_at--831--9132Chr04:24906011..24906035 (25 bp)
TGCGTGGGCATGTGGATTCCTCATC
LOC_Os04g42460
OsAffx.26442.1.S1_x_at--207--1813Chr04:25409255..25409279 (25 bp)
ACGCCCGCCTACGAATAGTGTACAT
LOC_Os04g43324
OsAffx.26442.1.S1_x_at--100--52Chr04:24906096..24906117 (22 bp)
ATTGTGCGGCGGGATCTCTGACTAC
LOC_Os04g42460
OsAffx.26442.1.S1_x_at--366--591Chr01:23914348..23914372 (25 bp)
ATCCAATGAGCTGGGACGAACACAT
LOC_Os01g41670
OsAffx.26442.1.S1_x_at--1151--2671Chr01:23914322..23914346 (25 bp)
AAGCGGCATGTGCTGCCTCACATGA
LOC_Os01g41670
OsAffx.26442.1.S1_x_at--233--8892Chr04:25409414..25409446 (25 bp)
TGAGGAAGGCTCTCCATGATCTCGA
LOC_Os04g43324
OsAffx.26442.1.S1_x_at--252--2211Chr01:23914243..23914267 (25 bp)
ACAACTTCTTCCCTCTTGTTATGAG
LOC_Os01g41670
OsAffx.26442.1.S1_x_at--957--7952Chr04:25409561..25409585 (25 bp)
GGATGTACGCCAACTATCGGTACCT
LOC_Os04g43324
OsAffx.26442.1.S1_x_at--60--5352Chr04:25409637..25409661 (25 bp)
GAAAGGGCTTTTCACGCCGGAACTG
LOC_Os04g43324
OsAffx.26442.1.S1_x_at--321--1451Chr01:23914045..23914069 (25 bp)
AGAAGCGCGTGGTCATGCAACTCGA
LOC_Os01g41670
OsAffx.26442.1.S1_x_at--905--8591Chr01:23914036..23914060 (25 bp)
TGGTCATGCAACTCGAGGCTGGCCT
LOC_Os01g41670
Target Sequence 
TGCGTGGGCATGTGGATTCCTCATCTCGGCCACGCCCGCCTACGAATAGTGTACATCATTATAAGCAGGCGGCTCAGAGA
TCGATTGTGCGGCGGGATCTCTGACTACGACTACAGGCTTGCGTTGCCATGGAAAAAGGTGTTCGATCCAATGAGCTGGG
ACGAACACATCAAGCGGCATGTGCTGCCTCACATGAGGAAGGCTCTCCATGATCTCGAGATCTCGGTAAGAATGACTTGG
CTACAAAACAACAACTTCTTCCCTCTTGTTATGAGGTGGGCATCCATCGTGCCAGTAAAGTACATGGTGCCACTTTTGAT
ACAAGGGTTCTTCAAGAAATGGATGTACGCCAACTATCGGTACCTAATGGGCGAGAGGCCTCGGCTAGATGAGGCGATGG
CTTGGTATGAAGTGTGGAAAGGGCTTTTCACGCCGGAACTGCTCGCGGAGAAGCGCGTGGTCATGCAACTCGAGGCTGGC
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26442.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis