Browse Element(s) Details


Os.36122.3.S1_x_at

Description gb:NM_192632.1
DB_XREF= gi:34912347
GEN=P0518F01.9
TID=Os.36122.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.10 (P0518F01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518F01.9 (P0518F01.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4165011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36122.3.S1_x_at--689--3071Chr01:23909969..23909993 (25 bp)
AATCATCTGTGGTTATGCTCAACAT
LOC_Os01g41650
Os.36122.3.S1_x_at--600--10811Chr01:23910086..23910110 (25 bp)
TTGTAGCCATGCAGGATTACTTGAT
LOC_Os01g41650
Os.36122.3.S1_x_at--174--6891Chr01:23910146..23910170 (25 bp)
GTATGGAATTACTCCTACACTGGAA
LOC_Os01g41650
Os.36122.3.S1_x_at--1057--9811Chr01:23910161..23910185 (25 bp)
TACACTGGAACACTATGCTTGCATG
LOC_Os01g41650
Os.36122.3.S1_x_at--845--7911Chr01:23910185..23910209 (25 bp)
GGTTGATATTCTGGCCAAGGCTGGA
LOC_Os01g41650
Os.36122.3.S1_x_at--736--2531Chr01:23910211..23910235 (25 bp)
AACTAGCTGAGGCTGAATCTCTTAT
LOC_Os01g41650
Os.36122.3.S1_x_at--301--9771Chr01:23910236..23910260 (25 bp)
TAATGAGATGCCATTGACCCCAGAT
LOC_Os01g41650
Os.36122.3.S1_x_at--1035--5811Chr01:23910251..23910275 (25 bp)
GACCCCAGATGCATCCTTATGGAAG
LOC_Os01g41650
Os.36122.3.S1_x_at--384--5371Chr01:23910272..23910296 (25 bp)
GAAGACCATTCTTGGAGCATGTAGG
LOC_Os01g41650
Os.36122.3.S1_x_at--1071--5511Chr01:23910304..23910328 (25 bp)
GAAACATTGAGATTGCTGAGCGAGC
LOC_Os01g41650
Os.36122.3.S1_x_at--995--431Chr01:23910365..23910389 (25 bp)
ATCTTCTTGCATATTGTTGTCTAAC
LOC_Os01g41650
Target Sequence 
AATCATCTGTGGTTATGCTCAACATGGTCATGGGTATAAGGCATTGGAAGCCTTCCAAGAGATGATAGATGAGGGGAATG
TACCTGATGAGATAACATTTGTGGGTGTCCTCTCAGCTTGTAGCCATGCAGGATTACTTGATGAGGGAAGGAGGTACTTC
AAATTGCTGAGTAGTGTGTATGGAATTACTCCTACACTGGAACACTATGCTTGCATGGTTGATATTCTGGCCAAGGCTGG
AAAACTAGCTGAGGCTGAATCTCTTATTAATGAGATGCCATTGACCCCAGATGCATCCTTATGGAAGACCATTCTTGGAG
CATGTAGGATGCATGGAAACATTGAGATTGCTGAGCGAGCAGCAGAAAAATTGTTTGAGTCACAACCAGATGATATATCT
TCTTGCATATTGTTGTCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36122.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis