Browse Element(s) Details


Os.11314.1.S1_at

Description gb:AK121212.1
DB_XREF= gi:37990835
TID=Os.11314.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.5 (P0518F01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089H03, full insert sequence.
FL= gb:AK121212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4161011/11mitochondrial ATP synthase g subunit family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11314.1.S1_at--945--1911Chr01:23884066..23884090 (25 bp)
ACGGGTGCGCCTACTACAAGGAGGT
LOC_Os01g41610
Os.11314.1.S1_at--894--10691Chr01:23881561..23881585 (25 bp)
TTGCCAGGCCGCTATGAGGCATTTT
LOC_Os01g41610
Os.11314.1.S1_at--1136--8891Chr01:23881448..23881472 (25 bp)
TGAGCTTTATGCGTGGTTCTGCGTA
LOC_Os01g41610
Os.11314.1.S1_at--1011--8251Chr01:23881411..23881435 (25 bp)
GGCAGAGGATTCACCATAACCGGCT
LOC_Os01g41610
Os.11314.1.S1_at--488--671Chr01:23881318..23881342 (25 bp)
ATGACAAAGATACCTCCTGCCTTTT
LOC_Os01g41610
Os.11314.1.S1_at--300--2331Chr01:23881276..23881300 (25 bp)
AAAGTCTTTCTAGTGCTGGATGTCA
LOC_Os01g41610
Os.11314.1.S1_at--986--751Chr01:23881257..23881281 (25 bp)
ATGTCAGCCAAGACGAGCACATCGT
LOC_Os01g41610
Os.11314.1.S1_at--748--5111Chr01:23881241..23881265 (25 bp)
GCACATCGTTGCAACACTGCTTCAA
LOC_Os01g41610
Os.11314.1.S1_at--1006--3111Chr01:23881215..23881239 (25 bp)
AATTTGCTCGATCTCTCGATTGCCA
LOC_Os01g41610
Os.11314.1.S1_at--209--4051Chr01:23881199..23881223 (25 bp)
CGATTGCCATTTTGGTGTCCTGTAA
LOC_Os01g41610
Os.11314.1.S1_at--742--3091Chr01:23881169..23881193 (25 bp)
AATACTGAAATTCCATCTTGCCCCA
LOC_Os01g41610
Target Sequence 
ACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAG
GAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGG
TGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTT
ATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTNTAGAAGAGTTCTGATTAA
GACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTT
ATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTC
TCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis