Browse Element(s) Details

OsAffx.28171.1.S1_at

Description

tigr:9634.m04715
TID=OsAffx.28171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48280	11/11	hypothetical protein
LOC_Os02g11850	5/11	hypothetical protein
LOC_Os01g41600	4/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48220	NA	NA	6	+	29170336..29171172	hypothetical protein
LOC_Os06g48230	Os.52719.1.S1_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230	Os.8227.1.A1_s_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240	OsAffx.28169.2.S1_at	11/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48240	OsAffx.25760.1.S1_x_at	1/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48250	OsAffx.28169.1.S1_at	11/11	6	+	29183400..29185123	ATPase, AAA family protein, expressed
LOC_Os06g48260	NA	NA	6	+	29186079..29186282	hypothetical protein
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein
LOC_Os06g48280	OsAffx.28171.1.S1_at	11/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48280	OsAffx.24197.1.S1_x_at	1/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48290	OsAffx.15983.1.S1_at	10/11	6	+	29197272..29198358	Homeobox domain containing protein
LOC_Os06g48300	Os.39552.1.A1_s_at	11/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300	Os.34372.1.S1_at	10/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310	NA	NA	6	+	29210703..29211002	cleavage stimulation factor, putative
LOC_Os06g48320	Os.7620.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320	Os.51280.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28171.1.S1_at--1062--1063	1	Chr06:29192839..29192863 (25 bp)	TTCGCTCCCAGTGTCATGGATCGAT	LOC_Os06g48280
OsAffx.28171.1.S1_at--990--479	1	Chr06:29192842..29192866 (25 bp)	GCTCCCAGTGTCATGGATCGATCAA	LOC_Os06g48280
OsAffx.28171.1.S1_at--127--347	2	Chr06:29192847..29192871 (25 bp)	CAGTGTCATGGATCGATCAATGTCA	LOC_Os06g48280
OsAffx.28171.1.S1_at--891--639	3	Chr06:29192857..29192881 (25 bp)	GATCGATCAATGTCATGTCACCCTG	LOC_Os06g48280
OsAffx.28171.1.S1_at--1116--643	3	Chr06:29192861..29192885 (25 bp)	GATCAATGTCATGTCACCCTGGCGT	LOC_Os06g48280
OsAffx.28171.1.S1_at--396--299	2	Chr06:29192865..29192889 (25 bp)	AATGTCATGTCACCCTGGCGTTTGA	LOC_Os06g48280
OsAffx.28171.1.S1_at--911--961	3	Chr06:29192869..29192893 (25 bp)	TCATGTCACCCTGGCGTTTGATTGA	LOC_Os06g48280
OsAffx.28171.1.S1_at--1123--709	2	Chr06:29192873..29192897 (25 bp)	GTCACCCTGGCGTTTGATTGATCTC	LOC_Os06g48280
OsAffx.28171.1.S1_at--958--419	1	Chr06:29192877..29192901 (25 bp)	CCCTGGCGTTTGATTGATCTCTTCT	LOC_Os06g48280
OsAffx.28171.1.S1_at--648--641	3	Chr06:29192892..29192916 (25 bp)	GATCTCTTCTTTGTAGATTTCTACG	LOC_Os06g48280
OsAffx.28171.1.S1_at--925--875	1	Chr06:29192903..29192927 (25 bp)	TGTAGATTTCTACGACGATGTCGAG	LOC_Os06g48280

Target Sequence

TTCGCTCCCAGTGTCATGGATCGATCAATGTCATGTCACCCTGGCGTTTGATTGATCTCTTCTTTGTAGATTTCTACGAC
GATGTCGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis