Browse Element(s) Details

Os.39552.1.A1_s_at

Description

gb:CF311010
DB_XREF= gi:33682771
DB_XREF=ABF--06-B01.g1
CLONE=ABF--06-B01
TID=Os.39552.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39552 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48300	11/11	Protein phosphatase 2C containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48250	OsAffx.28169.1.S1_at	11/11	6	+	29183400..29185123	ATPase, AAA family protein, expressed
LOC_Os06g48260	NA	NA	6	+	29186079..29186282	hypothetical protein
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein
LOC_Os06g48280	OsAffx.28171.1.S1_at	11/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48280	OsAffx.24197.1.S1_x_at	1/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48290	OsAffx.15983.1.S1_at	10/11	6	+	29197272..29198358	Homeobox domain containing protein
LOC_Os06g48300	Os.39552.1.A1_s_at	11/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300	Os.34372.1.S1_at	10/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310	NA	NA	6	+	29210703..29211002	cleavage stimulation factor, putative
LOC_Os06g48320	Os.7620.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320	Os.51280.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_x_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	Os.15740.1.A1_at	9/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.11567.1.S1_s_at	1/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48340	NA	NA	6	+	29233082..29233404	hypothetical protein
LOC_Os06g48350	Os.8401.2.S1_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_a_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	OsAffx.14511.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0015071	molecular_function	protein phosphatase type 2C activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39552.1.A1_s_at--589--137	1	Chr06:29207393..29207417 (25 bp)	AGACCGACGAATGATCAAGCCTCCT	LOC_Os06g48300
Os.39552.1.A1_s_at--107--409	1	Chr06:29207389..29207413 (25 bp)	CGACGAATGATCAAGCCTCCTAACA	LOC_Os06g48300
Os.39552.1.A1_s_at--931--855	1	Chr06:29207250..29207274 (25 bp)	TGGATGCTGCTGTAGCTGAACATTG	LOC_Os06g48300
Os.39552.1.A1_s_at--119--911	1	Chr06:29207246..29207270 (25 bp)	TGCTGCTGTAGCTGAACATTGTAAC	LOC_Os06g48300
Os.39552.1.A1_s_at--160--911	1	Chr06:29207243..29207267 (25 bp)	TGCTGTAGCTGAACATTGTAACTTG	LOC_Os06g48300
Os.39552.1.A1_s_at--455--53	1	Chr06:29207147..29207171 (25 bp)	ATCGCAGGTTAAGTGTTGGTCCTCA	LOC_Os06g48300
Os.39552.1.A1_s_at--153--501	1	Chr06:29207144..29207168 (25 bp)	GCAGGTTAAGTGTTGGTCCTCAATC	LOC_Os06g48300
Os.39552.1.A1_s_at--100--789	1	Chr06:29207141..29207165 (25 bp)	GGTTAAGTGTTGGTCCTCAATCATA	LOC_Os06g48300
Os.39552.1.A1_s_at--373--287	1	Chr06:29207137..29207161 (25 bp)	AAGTGTTGGTCCTCAATCATATGAT	LOC_Os06g48300
Os.39552.1.A1_s_at--801--741	1	Chr06:29207135..29207159 (25 bp)	GTGTTGGTCCTCAATCATATGATGT	LOC_Os06g48300
Os.39552.1.A1_s_at--901--779	1	Chr06:29207130..29207154 (25 bp)	GGTCCTCAATCATATGATGTAGCTT	LOC_Os06g48300

Target Sequence

AGACCGACGAATGATCAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTTGCAAG
TTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGTGTCATTTGTGGATGCTGCTGTAGCT
GAACATTGTAACTTGTCGGGGGATGTGTTTTTTGCCATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAA
CTTGCGATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis