Browse Element(s) Details


OsAffx.24197.1.S1_x_at

Description tigr:9630.m01068
TID=OsAffx.24197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1185011/11hypothetical protein
LOC_Os01g416001/11expressed protein
LOC_Os06g482801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11850OsAffx.24197.1.S1_x_at11/112+6144233..6145039hypothetical protein
LOC_Os02g11850OsAffx.28171.1.S1_at5/112+6144233..6145039hypothetical protein
LOC_Os02g11870Os.55448.1.S1_at11/112+6149352..6150136expressed protein
LOC_Os02g11880OsAffx.13362.2.S1_at10/112+6154830..6155155hypothetical protein
LOC_Os02g11890NANA2+6158355..6159760Syntaxin 124, putative
LOC_Os02g11900OsAffx.24198.1.S1_at8/112+6163475..6163957hypothetical protein
LOC_Os02g11910NANA2+6167015..6167929hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24197.1.S1_x_at--196--1371Chr02:6144834..6144939 (25 bp)
AGACCGACCCTTCAGATTTCTATGA
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--605--5811Chr02:6144833..6144938 (25 bp)
GACCGACCCTTCAGATTTCTATGAT
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--775--1791Chr02:6144832..6144937 (25 bp)
ACCGACCCTTCAGATTTCTATGATG
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--1106--3651Chr02:6144825..6144845 (21 bp)
CTTCAGATTTCTATGATGACGTCGA
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--785--1251Chr02:6144821..6144845 (25 bp)
AGATTTCTATGATGACGTCGAGGAC
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--40--8952Chr06:29192922..29192942 (21 bp)
TGACGTCGAGGACGGAATGCGTGAA
LOC_Os06g48280
OsAffx.24197.1.S1_x_at--496--2392Chr01:23879048..23879285 (25 bp)
AAACTACTGCAAGGGCAAGGCCGAG
LOC_Os01g41600
OsAffx.24197.1.S1_x_at--1021--4491Chr02:6144559..6144583 (25 bp)
GCCGAGAACGGCTGCGTCCCCGACG
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--26--1091Chr02:6144474..6144498 (25 bp)
AGGGCTCCAAGGTGCTCGCCCACAA
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--982--1031Chr02:6144465..6144489 (25 bp)
AGGTGCTCGCCCACAACCGGGAGGC
LOC_Os02g11850
OsAffx.24197.1.S1_x_at--777--4851Chr02:6144402..6144426 (25 bp)
GCTACCACACAGCTCCGCTGCCACG
LOC_Os02g11850
Target Sequence 
AGACCGACCCTTCAGATTTCTATGATGACGTCGAGGACGGAATGCGTGAAAACTACTGCAAGGGCAAGGCCGAGAACGGC
TGCGTCCCCGACGGCGCGGCGGCCCACCGGCTCGAGCCAAGCGGCGGGGAGTACAACTACGCGGCGGCGTCCAAGGGCTC
CAAGGTGCTCGCCCACAACCGGGAGGCCAAGGGCGCCGCCAACATCCTCGGCGCCACGCTCCTCCGCTACCACACAGCTC
CGCTGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24197.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis