Browse Element(s) Details


Os.55448.1.S1_at

Description gb:AK108109.1
DB_XREF= gi:32993318
TID=Os.55448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B10, full insert sequence.
FL= gb:AK108109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1187011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11850OsAffx.24197.1.S1_x_at11/112+6144233..6145039hypothetical protein
LOC_Os02g11850OsAffx.28171.1.S1_at5/112+6144233..6145039hypothetical protein
LOC_Os02g11870Os.55448.1.S1_at11/112+6149352..6150136expressed protein
LOC_Os02g11880OsAffx.13362.2.S1_at10/112+6154830..6155155hypothetical protein
LOC_Os02g11890NANA2+6158355..6159760Syntaxin 124, putative
LOC_Os02g11900OsAffx.24198.1.S1_at8/112+6163475..6163957hypothetical protein
LOC_Os02g11910NANA2+6167015..6167929hypothetical protein
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55448.1.S1_at--461--7111Chr02:6149844..6149868 (25 bp)
GTCACCACGCGCCAAGAAGAGTCCT
LOC_Os02g11870
Os.55448.1.S1_at--143--6091Chr02:6149826..6149850 (25 bp)
GAGTCCTTCGCTTGGGAGGGAATAA
LOC_Os02g11870
Os.55448.1.S1_at--95--6091Chr02:6149611..6149635 (25 bp)
GAGTACGAGCAGAACTTCGACGAGG
LOC_Os02g11870
Os.55448.1.S1_at--1027--4871Chr02:6149481..6149505 (25 bp)
GCTTTGGCGTTTCGCGCGCTAATTA
LOC_Os02g11870
Os.55448.1.S1_at--376--4031Chr02:6149474..6149498 (25 bp)
CGTTTCGCGCGCTAATTAATTATTA
LOC_Os02g11870
Os.55448.1.S1_at--223--8591Chr02:6149438..6149462 (25 bp)
TGGTTTAAAACTGTCGATGGCGGGT
LOC_Os02g11870
Os.55448.1.S1_at--440--6231Chr02:6149423..6149447 (25 bp)
GATGGCGGGTAATTCGAACCTCGTT
LOC_Os02g11870
Os.55448.1.S1_at--760--3151Chr02:6149413..6149437 (25 bp)
AATTCGAACCTCGTTTTGCTTTGCT
LOC_Os02g11870
Os.55448.1.S1_at--1061--10271Chr02:6149399..6149423 (25 bp)
TTTGCTTTGCTCTCGATATGTAAAT
LOC_Os02g11870
Os.55448.1.S1_at--961--5211Chr02:6149360..6149384 (25 bp)
GAATTATGCTGTCCTAATCCATCGA
LOC_Os02g11870
Os.55448.1.S1_at--290--4731Chr02:6149353..6149377 (25 bp)
GCTGTCCTAATCCATCGATCGAAAT
LOC_Os02g11870
Target Sequence 
GTCACCACGCGCCAAGAAGAGTCCTTCGCTTGGGAGGGAATAAGGCGGCGGCGGCGGCGGCGGTGCACCACCGCCGCGGC
GAGGCGGAGGAGGAGGGGGAGTACTTCGATTCCGGCGGCGGCGTGGGTGTCCTGCGTGCGCTGTGGAGGAGGATCGTGAG
GGGGAGGAGGTGGAAGGTGATGAGCCGGAGCGGGTCGTCGACGGCGAGGAGGAGGGAGCAGTACGCGCAGGACGAGTACG
AGCAGAACTTCGACGAGGGCGCCGCCGCGGCCGGCGGGGAGCCCGAGCCGGAGTACCTCTCGCGCTCCTTCTCCGCCCGC
TACGCCGCCGCCGGCGGCGGCCGGCGATCCGCCGGGCTAGCGCGCTTTGGCGTTTCGCGCGCTAATTAATTATTAATCGA
TGTCGATGGTTTAAAACTGTCGATGGCGGGTAATTCGAACCTCGTTTTGCTTTGCTCTCGATATGTAAATTAAATTTGTG
GAATGAATTATGCTGTCCTAATCCATCGATCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis