Browse Element(s) Details


OsAffx.2578.1.S1_at

Description tigr:9630.m01075
TID=OsAffx.2578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1192011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11870Os.55448.1.S1_at11/112+6149352..6150136expressed protein
LOC_Os02g11880OsAffx.13362.2.S1_at10/112+6154830..6155155hypothetical protein
LOC_Os02g11890NANA2+6158355..6159760Syntaxin 124, putative
LOC_Os02g11900OsAffx.24198.1.S1_at8/112+6163475..6163957hypothetical protein
LOC_Os02g11910NANA2+6167015..6167929hypothetical protein
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2578.1.S1_at--213--1811Chr02:6172444..6172468 (25 bp)
ACCCTAACGGCCCAATGAGAGATAC
LOC_Os02g11920
OsAffx.2578.1.S1_at--1056--3711Chr02:6172441..6172465 (25 bp)
CTAACGGCCCAATGAGAGATACCCA
LOC_Os02g11920
OsAffx.2578.1.S1_at--740--9811Chr02:6172440..6172464 (25 bp)
TAACGGCCCAATGAGAGATACCCAA
LOC_Os02g11920
OsAffx.2578.1.S1_at--719--1891Chr02:6172438..6172462 (25 bp)
ACGGCCCAATGAGAGATACCCAAGC
LOC_Os02g11920
OsAffx.2578.1.S1_at--424--4551Chr02:6172435..6172459 (25 bp)
GCCCAATGAGAGATACCCAAGCCCG
LOC_Os02g11920
OsAffx.2578.1.S1_at--960--3193Chr11:11720642..11720770 (25 bp)
CAATGAGAGATACCCAAGCCCGCAG
NONE
OsAffx.2578.1.S1_at--1027--693Chr11:11720751..11720772 (22 bp)
ATGAGAGATACCCAAGCCCGCAGCA
NONE
OsAffx.2578.1.S1_at--66--8911Chr02:6172429..6172453 (25 bp)
TGAGAGATACCCAAGCCCGCAGCAG
LOC_Os02g11920
OsAffx.2578.1.S1_at--683--6013Chr11:11720751..11720774 (24 bp)
GAGAGATACCCAAGCCCGCAGCAGC
NONE
OsAffx.2578.1.S1_at--43--9051Chr02:6172403..6172427 (25 bp)
TGCAGCACCGTTCGCTCCGAGAGTG
LOC_Os02g11920
OsAffx.2578.1.S1_at--1122--3391Chr02:6172401..6172425 (25 bp)
CAGCACCGTTCGCTCCGAGAGTGGC
LOC_Os02g11920
Target Sequence 
ACCCTAACGGCCCAATGAGAGATACCCAAGCCCGCAGCAGCTGCAGCACCGTTCGCTCCGAGAGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis