Browse Element(s) Details


OsAffx.24201.1.S1_at

Description tigr:9630.m01079
TID=OsAffx.24201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24201.1.S1_at--369--5751Chr02:6195195..6195219 (25 bp)
GACGGAGCCGGTGATCGTCAGCATC
LOC_Os02g11950
OsAffx.24201.1.S1_at--382--511Chr02:6195208..6195232 (25 bp)
ATCGTCAGCATCCACCAGGTGCAGC
LOC_Os02g11950
OsAffx.24201.1.S1_at--164--4171Chr02:6195290..6195314 (25 bp)
CGCCGTCGTGCGTCTGGCAGAAGAA
LOC_Os02g11950
OsAffx.24201.1.S1_at--298--4251Chr02:6195292..6195316 (25 bp)
CCGTCGTGCGTCTGGCAGAAGAACA
LOC_Os02g11950
OsAffx.24201.1.S1_at--782--9411Chr02:6195295..6195319 (25 bp)
TCGTGCGTCTGGCAGAAGAACATCC
LOC_Os02g11950
OsAffx.24201.1.S1_at--679--1431Chr02:6195311..6195335 (25 bp)
AGAACATCCTCATGGGCGGCAAGTG
LOC_Os02g11950
OsAffx.24201.1.S1_at--420--5491Chr02:6195312..6195336 (25 bp)
GAACATCCTCATGGGCGGCAAGTGC
LOC_Os02g11950
OsAffx.24201.1.S1_at--1064--9611Chr02:6195320..6195344 (25 bp)
TCATGGGCGGCAAGTGCCAGCTCCC
LOC_Os02g11950
OsAffx.24201.1.S1_at--977--791Chr02:6195322..6195346 (25 bp)
ATGGGCGGCAAGTGCCAGCTCCCCG
LOC_Os02g11950
OsAffx.24201.1.S1_at--88--8231Chr02:6195328..6195352 (25 bp)
GGCAAGTGCCAGCTCCCCGAGTTCT
LOC_Os02g11950
OsAffx.24201.1.S1_at--744--1571Chr02:6195338..6195362 (25 bp)
AGCTCCCCGAGTTCTCCGGCGTCAT
LOC_Os02g11950
Target Sequence 
GACGGAGCCGGTGATCGTCAGCATCCACCAGGTGCAGCCCGGCGTCGTCGGCGTCGGCGCCGGCGGCGAGCTGGCGGACG
ACGGGCTGGGCGGGCCGCCGTCGTGCGTCTGGCAGAAGAACATCCTCATGGGCGGCAAGTGCCAGCTCCCCGAGTTCTCC
GGCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis