Browse Element(s) Details


OsAffx.11993.1.S1_at

Description tigr:9630.m01080
TID=OsAffx.11993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1196011/11ABC transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11993.1.S1_at--189--3491Chr02:6204222..6204246 (25 bp)
CAGGAGGTGAGGATCTCTCAAGTTT
LOC_Os02g11960
OsAffx.11993.1.S1_at--211--6131Chr02:6204225..6204249 (25 bp)
GAGGTGAGGATCTCTCAAGTTTTCC
LOC_Os02g11960
OsAffx.11993.1.S1_at--83--7751Chr02:6204227..6204251 (25 bp)
GGTGAGGATCTCTCAAGTTTTCCGG
LOC_Os02g11960
OsAffx.11993.1.S1_at--1120--8871Chr02:6204229..6204253 (25 bp)
TGAGGATCTCTCAAGTTTTCCGGGC
LOC_Os02g11960
OsAffx.11993.1.S1_at--718--991Chr02:6204231..6204255 (25 bp)
AGGATCTCTCAAGTTTTCCGGGCCA
LOC_Os02g11960
OsAffx.11993.1.S1_at--218--6391Chr02:6204233..6204257 (25 bp)
GATCTCTCAAGTTTTCCGGGCCATG
LOC_Os02g11960
OsAffx.11993.1.S1_at--539--411Chr02:6204234..6204258 (25 bp)
ATCTCTCAAGTTTTCCGGGCCATGG
LOC_Os02g11960
OsAffx.11993.1.S1_at--567--3751Chr02:6204236..6204260 (25 bp)
CTCTCAAGTTTTCCGGGCCATGGAG
LOC_Os02g11960
OsAffx.11993.1.S1_at--290--10391Chr02:6204244..6204268 (25 bp)
TTTTCCGGGCCATGGAGCATGCGAA
LOC_Os02g11960
OsAffx.11993.1.S1_at--191--9291Chr02:6204247..6204271 (25 bp)
TCCGGGCCATGGAGCATGCGAAGCT
LOC_Os02g11960
OsAffx.11993.1.S1_at--462--4411Chr02:6204252..6204276 (25 bp)
GCCATGGAGCATGCGAAGCTCAGGA
LOC_Os02g11960
Target Sequence 
CAGGAGGTGAGGATCTCTCAAGTTTTCCGGGCCATGGAGCATGCGAAGCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis