Browse Element(s) Details


Os.10627.1.S1_a_at

Description gb:AK063336.1
DB_XREF= gi:32973354
TID=Os.10627.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A07, full insert sequence.
FL= gb:AK063336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1197011/11expressed protein
LOC_Os06g370101/11ZIP zinc/iron transport family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0010043biological_processresponse to zinc ion
GO:0030001biological_processmetal ion transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10627.1.S1_a_at--560--10851Chr02:6206889..6206913 (25 bp)
TTGGCCAGGCCCCAGGACATAGCAA
LOC_Os02g11970
Os.10627.1.S1_a_at--788--1471Chr02:6206909..6206933 (25 bp)
AGCAAGCCAATCTAAGGGTTTATTT
LOC_Os02g11970
Os.10627.1.S1_a_at--453--10315Chr08:9919631..9919679 (25 bp)
TTTTCAGAATCTTAGACTGTTTGGG
NONE
Os.10627.1.S1_a_at--830--7551Chr02:6207124..6207148 (25 bp)
GGGCCTAAGTAGCACATAGATCACA
LOC_Os02g11970
Os.10627.1.S1_a_at--575--6451Chr02:6207142..6207166 (25 bp)
GATCACATCTATTTTAAATTCTTCT
LOC_Os02g11970
Os.10627.1.S1_a_at--1073--2511Chr02:6207169..6207193 (25 bp)
AACTTGTTGATGTGTGTCCATTGCC
LOC_Os02g11970
Os.10627.1.S1_a_at--348--791Chr02:6207178..6207202 (25 bp)
ATGTGTGTCCATTGCCAAAGACTGG
LOC_Os02g11970
Os.10627.1.S1_a_at--327--112Chr02:6207249..6207273 (25 bp)
ATTCATGCCCAAAAGTTTGTATTCG
LOC_Os02g11970
Os.10627.1.S1_a_at--585--2831Chr02:6207261..6207285 (25 bp)
AAGTTTGTATTCGAGTCTATGTAAA
LOC_Os02g11970
Os.10627.1.S1_a_at--1137--1152Chr02:6207274..6207298 (25 bp)
AGTCTATGTAAATTTGCTCCAAACG
LOC_Os02g11970
Os.10627.1.S1_a_at--940--10692Chr02:6207287..6207311 (25 bp)
TTGCTCCAAACGTATCTGAAACTGT
LOC_Os02g11970
Target Sequence 
TTGGCCAGGCCCCAGGACATAGCAAGCCAATCTAAGGGTTTATTTGGGGGAGCTTTAAATTTTGAGAAGCAGCTGTTTGG
TAGCCAGCTTCTGAGAATCTGGAAAAGCTCTGAANCCTAGCTTTTATATCTNCTGGCTTTTTAGTTCATTTTTCAGAATC
TTAGACTGTTTGGGGCAGCTTCTAGCAGAANCAGCTTTTAGGAAAAGCTGCAGCTGGGACAAACTCTCCCAAACAGGGCC
TAAGTAGCACATAGATCACATCTATTTTAAATTCTTCTGAAACTTGTTGATGTGTGTCCATTGCCAAAGACTGGAGATAT
AATCTATTNTCATTATTAAAAAAATAGCACATAGCTAGAAATTCATGCCCAAAAGTTTGTATTCGAGTCTATGTAAATTT
GCTCCAAACGTATCTGAAACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10627.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis