Browse Element(s) Details


Os.18817.1.S1_at

Description gb:AK073717.1
DB_XREF= gi:32983740
TID=Os.18817.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057L23, full insert sequence.
FL= gb:AK073717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1194010/11sterol glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11900OsAffx.24198.1.S1_at8/112+6163475..6163957hypothetical protein
LOC_Os02g11910NANA2+6167015..6167929hypothetical protein
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18817.1.S1_at--812--9671Chr02:6192603..6192728 (25 bp)
TCACCATGCTGGCAGTGGATCTACA
LOC_Os02g11940
Os.18817.1.S1_at--25--1272Chr02:6192996..6193020 (25 bp)
AGATTTCATGTCCTTTCCTGCTGGA
LOC_Os02g11940
Os.18817.1.S1_at--964--4831Chr02:6193042..6193066 (25 bp)
GCTACACTGGCTAGGAGTGGCACCT
LOC_Os02g11940
Os.18817.1.S1_at--751--5871Chr02:6193067..6193091 (25 bp)
GAGCCCCTAGGAAGACAACATCTAA
LOC_Os02g11940
Os.18817.1.S1_at--1048--9731Chr02:6193089..6193113 (25 bp)
TAATTCCGGATACTGACAATGCCTC
LOC_Os02g11940
Os.18817.1.S1_at--558--8071Chr02:6193145..6193169 (25 bp)
GGAGCTATCAAATCGGCATTATCAC
LOC_Os02g11940
Os.18817.1.S1_at--13--4831Chr02:6193181..6193205 (25 bp)
GCTCAGGCAACCAGAATCGCTAACA
LOC_Os02g11940
Os.18817.1.S1_at--63--2191Chr02:6193203..6193322 (25 bp)
ACAAACTTTCTTCTGAGGACGGGAT
LOC_Os02g11940
Os.18817.1.S1_at--541--7671Chr02:6193318..6193342 (25 bp)
GGGATTGGAGAAGCCCTCAGGATCT
LOC_Os02g11940
Os.18817.1.S1_at--1029--5551Chr02:6193344..6193368 (25 bp)
GAAAGAGAGTTTTGCCCCAAATTGA
LOC_Os02g11940
Os.18817.1.S1_at--775--51Chr02:6193461..6193485 (25 bp)
ATTGATTTATTATGCGCCGTATGAA
NONE
Target Sequence 
TCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATC
AGTTTTACTGGNCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACT
GACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGC
TCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTG
CCCCAAATTGAAAGTTAAGTGATAAGAAGCNANGGGGATACGACGAACCNATTGCACGTAAAATAGTTATGTGCTTTGAA
GTTTGAATTAGCATTTGTCACTCCNATTGATTTATTATGCGCCGTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis