Browse Element(s) Details


Os.27549.1.S1_s_at

Description gb:AK099955.1
DB_XREF= gi:32985164
TID=Os.27549.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124K18, full insert sequence.
FL= gb:AK099955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1184011/11Coatomer WD associated domain containing protein, expressed
LOC_Os02g118304/11Coatomer beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11850OsAffx.24197.1.S1_x_at11/112+6144233..6145039hypothetical protein
LOC_Os02g11850OsAffx.28171.1.S1_at5/112+6144233..6145039hypothetical protein
LOC_Os02g11870Os.55448.1.S1_at11/112+6149352..6150136expressed protein
LOC_Os02g11880OsAffx.13362.2.S1_at10/112+6154830..6155155hypothetical protein
LOC_Os02g11890NANA2+6158355..6159760Syntaxin 124, putative

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Gene Ontology Classification
GO idTypeName
GO:0030126cellular_componentCOPI vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27549.1.S1_s_at--11--571Chr02:6133374..6133398 (25 bp)
ATCCTGACGAGTACCCAAACTTGTT
LOC_Os02g11840
Os.27549.1.S1_s_at--870--2232Chr02:6133338..6133362 (25 bp)
AAATTGCTCTCAATGTAGAAGCTAA
LOC_Os02g11840
Os.27549.1.S1_s_at--100--7691Chr02:6133022..6133046 (25 bp)
GGGTATTTATCCACCAGCTGAGGAG
LOC_Os02g11840
Os.27549.1.S1_s_at--1073--7012Chr02:6132998..6133022 (25 bp)
GTACATTATCCATGCTGAGAGGCCC
LOC_Os02g11840
Os.27549.1.S1_s_at--654--8891Chr02:6132983..6133007 (25 bp)
TGAGAGGCCCAATGAGACTCTGGTG
LOC_Os02g11840
Os.27549.1.S1_s_at--1043--8872Chr02:6132971..6132995 (25 bp)
TGAGACTCTGGTGGAAGCTTTCAAA
LOC_Os02g11840
Os.27549.1.S1_s_at--416--8552Chr02:6132669..6132929 (25 bp)
TGGAGATGACACTCACGAGGCTATT
LOC_Os02g11840
Os.27549.1.S1_s_at--1117--8932Chr02:6132009..6132033 (25 bp)
TGACTCCTACTGAAACTATGTGAAG
LOC_Os02g11840
Os.27549.1.S1_s_at--524--10092Chr02:6131993..6132017 (25 bp)
TATGTGAAGGCCGTTTTCCTCCACT
LOC_Os02g11840
Os.27549.1.S1_s_at--670--232Chr02:6131936..6131960 (25 bp)
ATATCCGACGATAAAACCCACAGAA
LOC_Os02g11840
Os.27549.1.S1_s_at--182--1812Chr02:6131921..6131945 (25 bp)
ACCCACAGAAATTAGTCATCGCTTT
LOC_Os02g11840
Target Sequence 
ATCCTGACGAGTACCCAAACTTGTTTGAGGACTGGCAAATTGCTCTCAATGTAGAAGCTAATGTCGCGCCCAAAAGGGGT
ATTTATCCACCAGCTGAGGAGTACATTATCCATGCTGAGAGGCCCAATGAGACTCTGGTGGAAGCTTTCAAAAGTATGCA
TATACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGGCTATTGAGGAAAATGGAGTAGAAGAGA
GCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGATGGTGCTGTCCTTGTGAACGGAAATGATACC
GAGGAACAGTGGGGTACGAACAACGAAGAATCATCAGCATAAAAGCTGTAGTTGAGCAAGTTATTGACTCCTACTGAAAC
TATGTGAAGGCCGTTTTCCTCCACTTGTATAATCATTGGGCGTGCTTTAAGATCGGCATATCCGACGATAAAACCCACAG
AAATTAGTCATCGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis