Browse Element(s) Details


Os.50431.1.S1_at

Description gb:AK121174.1
DB_XREF= gi:37990797
TID=Os.50431.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082I17, full insert sequence.
FL= gb:AK121174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g118201/11GTPase activating protein, putative, expressed
LOC_Os02g011101/11Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os01g113701/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50431.1.S1_at--507--8991Chr10:3882046..3882070 (25 bp)
TGAAGCCTCTGACTTGTTGGGTTGT
NONE
Os.50431.1.S1_at--420--6651Chr10:3882026..3882050 (25 bp)
GTTGTTGTATGTGTTAGTTCCTGGC
NONE
Os.50431.1.S1_at--932--9651Chr10:3882012..3882036 (25 bp)
TAGTTCCTGGCAATGCAGAGCTAGC
NONE
Os.50431.1.S1_at--698--5911Chr10:3881995..3882019 (25 bp)
GAGCTAGCACTGTAAGGAAATGACT
NONE
Os.50431.1.S1_at--421--2291Chr10:3881978..3882002 (25 bp)
AAATGACTGTGTTGAGGCAAGTGTC
NONE
Os.50431.1.S1_at--246--1111Chr10:3881959..3881983 (25 bp)
AGTGTCAAGCACTAACTTCTTCCAC
NONE
Os.50431.1.S1_at--87--11Chr10:3881921..3881945 (25 bp)
TCCATGGTAACCATTCCGTTACTCC
NONE
Os.50431.1.S1_at--925--27326Chr12:23660543..23660566 (24 bp)
AAGAATGTGTGCATGCTAAGGTGTA
NONE
Os.50431.1.S1_at--1027--2976Chr10:12599772..12599796 (25 bp)
AATGTGTGCATGGTATCTTGATTGA
NONE
Os.50431.1.S1_at--763--10491Chr10:3881582..3881606 (25 bp)
TTAACCATTGCTTCTCTGCATGCAA
NONE
Os.50431.1.S1_at--819--9012Chr08:641093..641117 (25 bp)
TGCAAATGCAGATCCATTCCTTTCC
NONE
Target Sequence 
TGAAGCCTCTGACTTGTTGGGTTGTTGTATGTGTTAGTTCCTGGCAATGCAGAGCTAGCACTGTAAGGAAATGACTGTGT
TGAGGCAAGTGTCAAGCACTAACTTCTTCCACAACAACCCTGTCTTCCATGGTAACCATTCCGTTACTCCCTCCTTCCCA
AATTGATCATCACACTATGAAATTCAAGATTTCTCAAATTGATCATCATATAACCGCATGGACACGGATTTCATCAGAAT
ACCATTAATACAACATGGAAGAATGTGTGCATGCTAAGGTGTAATTGGCATGGTGTTAATCGATGCATGTATTGTGGGAG
AATGTGTGCATGGTATCTTGATTGATGTGATTTAAATTATCATTGGTCTTGGTGCATAAACATATATGATGATCAATTTG
GGAAGGAGGGAGTATTTCTTTTGCTATGTAATGAGAACCATTGTGTAGAATTTTGTAAACAACTTTAACCATTGCTTCTC
TGCATGCAAATGCAGATCCATTCCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis