Browse Element(s) Details


OsAffx.24196.1.S1_at

Description tigr:9630.m01060
TID=OsAffx.24196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1179010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24196.1.S1_at--265--3951Chr02:6095222..6095246 (25 bp)
CGGACGCGGTGCACGTGTACGACTT
LOC_Os02g11790
OsAffx.24196.1.S1_at--140--8731Chr02:6095207..6095231 (25 bp)
TGTACGACTTCCTGTCCGGGTCGTG
LOC_Os02g11790
OsAffx.24196.1.S1_at--543--4651NONE
GCGTCGGCGGCAGTGTTTCATATTG
NONE
OsAffx.24196.1.S1_at--648--7433Chr02:6093246..6093270 (25 bp)
GTGTTTCATATTGGGCTAGGGCTAA
LOC_Os02g11790
OsAffx.24196.1.S1_at--1104--4853Chr11:19973169..19973193 (25 bp)
GCTAGGGCTAAGTCAAGATTTTCAC
NONE
OsAffx.24196.1.S1_at--954--1254Chr07:25064188..25064210 (22 bp)
AGATTTTCACTTTACACCATGTTTC
NONE
OsAffx.24196.1.S1_at--360--1732Chr02:6093202..6093226 (25 bp)
ACCATGTTTCTTTGCCAATTGCCAA
LOC_Os02g11790
OsAffx.24196.1.S1_at--372--4396Chr11:19973210..19973229 (20 bp)
GCCAATTGCCAAGAGTTGCACTTTG
NONE
OsAffx.24196.1.S1_at--756--7851Chr02:6093047..6093071 (25 bp)
GGTAGAGATGGCTAAACCCACTCAT
LOC_Os02g11790
OsAffx.24196.1.S1_at--962--8291Chr02:6093038..6093062 (25 bp)
GGCTAAACCCACTCATGACATGACG
LOC_Os02g11790
OsAffx.24196.1.S1_at--1004--1431Chr02:6093011..6093035 (25 bp)
AGAACGAGATGTGTGCTATCGTTTC
LOC_Os02g11790
Target Sequence 
CGGACGCGGTGCACGTGTACGACTTCCTGTCCGGGTCGTGGCGGCGCGGCGCGGCGATGCCTGGACCGAGGCGGTCGTTC
TTCGCGTGCGCCGCGGTGGGGAGGTGGGTGTTCGTCGCCGGCGGGCACGACGAGGAGAAGAACGCGCTGCGGTCGGCGGT
CGCGTACGACGCCGAGGCCGACGCGTGGGTGCCGCTCCCGGACATGGCGGCGGAGCGGGACGAGGCCAGGGGCGTCTGCG
TCGGCGGCAGTGTTTCATATTGGGCTAGGGCTAAGTCAAGATTTTCACTTTACACCATGTTTCTTTGCCAATTGCCAAGA
GTTGCACTTTGGGGCAGGGTAGAGATGGCTAAACCCACTCATGACATGACGAAAGAACGAGATGTGTGCTATCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis