Browse Element(s) Details


Os.39020.1.S1_at

Description gb:AK099831.1
DB_XREF= gi:32985040
TID=Os.39020.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105L05, full insert sequence.
FL= gb:AK099831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1178011/11Transcription factor S-II, central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39020.1.S1_at--689--10251Chr02:6088686..6088710 (25 bp)
TTTGTTAACTCGTCCAATCCTGCTG
LOC_Os02g11780
Os.39020.1.S1_at--1070--9411Chr02:6088695..6088719 (25 bp)
TCGTCCAATCCTGCTGCTAATGTAA
LOC_Os02g11780
Os.39020.1.S1_at--1158--3031Chr02:6088701..6088725 (25 bp)
AATCCTGCTGCTAATGTAACAACCA
LOC_Os02g11780
Os.39020.1.S1_at--1043--9071Chr02:6088709..6088733 (25 bp)
TGCTAATGTAACAACCACCCAGGCC
LOC_Os02g11780
Os.39020.1.S1_at--195--9811Chr02:6088717..6088741 (25 bp)
TAACAACCACCCAGGCCTACAAGGG
LOC_Os02g11780
Os.39020.1.S1_at--1011--9811Chr02:6088734..6088758 (25 bp)
TACAAGGGCCGGCAGCATGTACCCC
LOC_Os02g11780
Os.39020.1.S1_at--713--2851Chr02:6088737..6088761 (25 bp)
AAGGGCCGGCAGCATGTACCCCTTA
LOC_Os02g11780
Os.39020.1.S1_at--490--9491Chr02:6088764..6088788 (25 bp)
TCTGCTCGCCCGGTAGAGCAAATGA
LOC_Os02g11780
Os.39020.1.S1_at--780--5451Chr02:6088791..6088815 (25 bp)
GAACTGGTTCAGAAGTATGGTAAAA
LOC_Os02g11780
Os.39020.1.S1_at--144--2331Chr02:6088813..6088837 (25 bp)
AAAGATCATCTGTTCAGGCTCGTCC
LOC_Os02g11780
Os.39020.1.S1_at--334--6431Chr02:6088816..6088840 (25 bp)
GATCATCTGTTCAGGCTCGTCCTTG
LOC_Os02g11780
Target Sequence 
TTTGTTAACTCGTCCAATCCTGCTGCTAATGTAACAACCACCCAGGCCTACAAGGGCCGGCAGCATGTACCCCTTACCTC
TGCTCGCCCGGTAGAGCAAATGAGGGAACTGGTTCAGAAGTATGGTAAAAGATCATCTGTTCAGGCTCGTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis