Browse Element(s) Details


Os.24912.1.S2_a_at

Description gb:AK121183.1
DB_XREF= gi:37990806
TID=Os.24912.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084M01, full insert sequence.
FL= gb:AK070031.1 gb:AK121183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1182011/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24912.1.S2_a_at--517--4631Chr02:6118185..6118209 (25 bp)
GCGATATTATCTGCTCTTTTGGAGT
LOC_Os02g11820
Os.24912.1.S2_a_at--929--10851Chr02:6118203..6118227 (25 bp)
TTGGAGTTCTTGTGCATCATCGGAC
LOC_Os02g11820
Os.24912.1.S2_a_at--836--8131Chr02:6118224..6118248 (25 bp)
GGACAAAGGGTTTGCAGTGCCCAGC
LOC_Os02g11820
Os.24912.1.S2_a_at--85--7291Chr02:6118240..6118264 (25 bp)
GTGCCCAGCGGGATCAGGAACCATA
LOC_Os02g11820
Os.24912.1.S2_a_at--290--8171Chr02:6118256..6118280 (25 bp)
GGAACCATACTAGCCCTCGAGAGAA
LOC_Os02g11820
Os.24912.1.S2_a_at--775--7911Chr02:6118300..6118324 (25 bp)
GGTTGTGTATTTATCCGCTGTAGTT
LOC_Os02g11820
Os.24912.1.S2_a_at--990--6611Chr02:6118322..6118346 (25 bp)
GTTGGTTGTACAACTCGTTTCCACA
LOC_Os02g11820
Os.24912.1.S2_a_at--580--2971Chr02:6118352..6118376 (25 bp)
AATGGTCGAGCGTAACTGCGTCTGA
LOC_Os02g11820
Os.24912.1.S2_a_at--600--6351Chr02:6118404..6118428 (25 bp)
GATGCGCATTCCAATAGTGTTTGTA
LOC_Os02g11820
Os.24912.1.S2_a_at--262--10751Chr02:6118499..6118523 (25 bp)
TTGACTTTCTTTTCGGATTCTCCAT
LOC_Os02g11820
Os.24912.1.S2_a_at--257--10311Chr02:6118509..6118533 (25 bp)
TTTCGGATTCTCCATGGACCATGTG
LOC_Os02g11820
Target Sequence 
GCGATATTATCTGCTCTTTTGGAGTTCTTGTGCATCATCGGACAAAGGGTTTGCAGTGCCCAGCGGGATCAGGAACCATA
CTAGCCCTCGAGAGAATTTGTTAATTCATACTACTGGTTGTGTATTTATCCGCTGTAGTTGGTTGTACAACTCGTTTCCA
CAAGGACAATGGTCGAGCGTAACTGCGTCTGAGCATAAGCTCCACCCTTCGGAGTTCTTGATGCGCATTCCAATAGTGTT
TGTATATTTGTGTTTGATGCGGTTGCAACATGTATATTTGGGAAGGATGAGGCCTCGGGGCCTCGAATGGTTTTTTGACT
TTCTTTTCGGATTCTCCATGGACCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24912.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis