Browse Element(s) Details


OsAffx.2576.1.S1_x_at

Description tigr:9630.m01061
TID=OsAffx.2576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2576.1.S1_x_at--207--3811Chr02:6104935..6104959 (25 bp)
CTCCGTGCGAAGGCGCTCAAGGACA
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--448--2951Chr02:6104926..6104950 (25 bp)
AAGGCGCTCAAGGACAACACGTGGG
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--290--6031Chr02:6104899..6104923 (25 bp)
GAGATGGTGGCCTGCGACGACCCCT
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--1056--5771Chr02:6104884..6104908 (25 bp)
GACGACCCCTGGCTGAAGGAGATCT
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--31--5271Chr02:6104870..6104894 (25 bp)
GAAGGAGATCTTGCGGAGGAGGTGC
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--610--5431Chr02:6104843..6104867 (25 bp)
GAACGCAATGCGGACGAGGGCCCTC
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--859--5171Chr02:6104839..6104863 (25 bp)
GCAATGCGGACGAGGGCCCTCCACG
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--44--4351Chr02:6104805..6104829 (25 bp)
CCAGGCTCATCGACGACATGGATCG
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--590--8311Chr02:6104802..6104826 (25 bp)
GGCTCATCGACGACATGGATCGCCG
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--791--831Chr02:6104788..6104812 (25 bp)
ATGGATCGCCGCCATCGCAAGTTCT
LOC_Os02g11800
OsAffx.2576.1.S1_x_at--556--7971Chr02:6104786..6104810 (25 bp)
GGATCGCCGCCATCGCAAGTTCTTC
LOC_Os02g11800
Target Sequence 
CTCCGTGCGAAGGCGCTCAAGGACAACACGTGGGGGGAGATGGTGGCCTGCGACGACCCCTGGCTGAAGGAGATCTTGCG
GAGGAGGTGCGTGAACGCAATGCGGACGAGGGCCCTCCACGCCCAGATCACCAGGCTCATCGACGACATGGATCGCCGCC
ATCGCAAGTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2576.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis