Browse Element(s) Details


Os.24912.1.S1_a_at

Description gb:AK070031.1
DB_XREF= gi:32980055
TID=Os.24912.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038F08, full insert sequence.
FL= gb:AK070031.1 gb:AK121183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1182011/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11840Os.12356.1.S2_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.27549.1.S1_s_at11/112+6131811..6138158Coatomer WD associated domain containing protein, expressed
LOC_Os02g11840Os.37762.2.S1_x_at1/112+6131811..6138158Coatomer WD associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24912.1.S1_a_at--533--7371Chr02:6114529..6114553 (25 bp)
GTGACTGGGCATCGTTTGATTCTTT
LOC_Os02g11820
Os.24912.1.S1_a_at--697--6851Chr02:6114542..6114566 (25 bp)
GTTTGATTCTTTCGGCCAGCAACAA
LOC_Os02g11820
Os.24912.1.S1_a_at--9--3111Chr02:6114582..6114606 (25 bp)
AATAGTGTAGATCCCCTTGAGTCTG
LOC_Os02g11820
Os.24912.1.S1_a_at--802--5111Chr02:6114606..6114630 (25 bp)
GCACTTGCTCAACTATCATTTTCTG
LOC_Os02g11820
Os.24912.1.S1_a_at--426--3151Chr02:6114648..6114672 (25 bp)
AATTCATCAGCTTTTCCAGCTTCGG
LOC_Os02g11820
Os.24912.1.S1_a_at--396--611Chr02:6114675..6114699 (25 bp)
ATGCCCACTTCAGTTCCAAATGATG
LOC_Os02g11820
Os.24912.1.S1_a_at--26--7831Chr02:6114762..6114882 (25 bp)
GGTCACCAGGCCTCAACAGGAATGT
LOC_Os02g11820
Os.24912.1.S1_a_at--293--10151Chr02:6114884..6114908 (25 bp)
TATCCATGGATCTTCAGTTCAACAA
LOC_Os02g11820
Os.24912.1.S1_a_at--1086--6751Chr02:6114900..6114924 (25 bp)
GTTCAACAAACTGGTCTAGCTGCTC
LOC_Os02g11820
Os.24912.1.S1_a_at--491--5211Chr02:6114956..6114980 (25 bp)
GAATTCCCGAGCAACTAGTGGCATT
LOC_Os02g11820
Os.24912.1.S1_a_at--621--9911Chr02:6114998..6115022 (25 bp)
TACTGACAGTAGATCCATTGGCCGG
LOC_Os02g11820
Target Sequence 
GTGACTGGGCATCGTTTGATTCTTTCGGCCAGCAACAAACACCACAAACTGGCAATAGTGTAGATCCCCTTGAGTCTGCA
CTTGCTCAACTATCATTTTCTGAAACACCCTCTGCACCCAATTCATCAGCTTTTCCAGCTTCGGTCATGCCCACTTCAGT
TCCAAATGATGGAGGGTCATCCATGATGGGGCAGTCACATTCTTCATTTTTTTGGTGCACCCCCTGGAGTCTCAGGTCAC
CAGGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAGCTGCTCCGGCAGCTGGACTTCCGTT
CCAGGTCTCTGCGAATTCCCGAGCAACTAGTGGCATTCAAGAAGCAGCACCTAATACTGACAGTAGATCCATTGGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24912.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis