Browse Element(s) Details


Os.17474.1.A1_at

Description gb:BI812916
DB_XREF= gi:16578821
DB_XREF=G005A12
CLONE=G005A12
TID=Os.17474.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17474 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565238.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1179011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11800OsAffx.2576.1.S1_x_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11800OsAffx.2576.1.S1_at11/112+6104663..6104989hypothetical protein
LOC_Os02g11810NANA2+6106543..6106830hypothetical protein
LOC_Os02g11820Os.24912.1.S2_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.1.S1_a_at11/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.24912.2.S1_at6/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11820Os.50431.1.S1_at1/112+6110092..6118709GTPase activating protein, putative, expressed
LOC_Os02g11830Os.27549.1.S1_s_at4/112+6119987..6129209Coatomer beta subunit, putative, expressed
LOC_Os02g11830Os.37762.2.S1_x_at1/112+6119987..6129209Coatomer beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17474.1.A1_at--84--7571Chr02:6094810..6094834 (25 bp)
GGGCGCGACGATGTACATGCTCCGC
LOC_Os02g11790
Os.17474.1.A1_at--861--4211Chr02:6094523..6094547 (25 bp)
CCGCGTGCTGCGTCGAAGTATAACG
LOC_Os02g11790
Os.17474.1.A1_at--371--351Chr02:6094504..6094528 (25 bp)
ATAACGATACGTGCAAGTAATGTAC
LOC_Os02g11790
Os.17474.1.A1_at--1136--9931Chr02:6094461..6094485 (25 bp)
TACGTACGTACATATGCGCGCGCGC
LOC_Os02g11790
Os.17474.1.A1_at--186--4571Chr02:6094436..6094460 (25 bp)
GCGCGCGATTGTGTATACGTTTTTG
LOC_Os02g11790
Os.17474.1.A1_at--743--7431Chr02:6094426..6094450 (25 bp)
GTGTATACGTTTTTGTGCGCAATTT
LOC_Os02g11790
Os.17474.1.A1_at--503--8691Chr02:6094413..6094437 (25 bp)
TGTGCGCAATTTTTATAGTGTATAT
LOC_Os02g11790
Os.17474.1.A1_at--179--7411Chr02:6094384..6094408 (25 bp)
GTGTTGTACACTTAAAGCTCAGCGT
LOC_Os02g11790
Os.17474.1.A1_at--111--2031Chr02:6094375..6094399 (25 bp)
ACTTAAAGCTCAGCGTTTCGTATAT
LOC_Os02g11790
Os.17474.1.A1_at--569--6031Chr02:6094334..6094358 (25 bp)
GAGATGATCAGTTTTGCATAAGCTC
LOC_Os02g11790
Os.17474.1.A1_at--1036--10271Chr02:6094322..6094346 (25 bp)
TTTGCATAAGCTCTGTTTTGTTTGT
LOC_Os02g11790
Target Sequence 
GGGCGCGACGATGTACATGCTCCGCGACGGCCACCTCGCGGCGCGCGACGCCACGAACAACGGCGGCGCCGCGTGGCGGG
CGGTGGCGAGCCTGCCCGAGGACGGCCGCGCGGTGACGGCCCTCGCCGCCATCGGGGACGGCCGCGTGGTCGCCATCGGC
GCGGGGAGCCACGGCGGCGAGCAGGCGGTGTACCTGCTCACCACCGGGGAGGGCGGCGACAAGAACGGCGCGGCGCAGTC
GTGGGCGCGCGCCGCGGCGCCGCCGGAGTTCGCGGGGTACGTGCAGGCCGCGTGCTGCGTCGAAGTATAACGATACGTGC
AAGTAATGTACGTACAGAAACGTACACTGTACGTACGTACATATGCGCGCGCGCGCGCGCGATTGTGTATACGTTTTTGT
GCGCAATTTTTATAGTGTATATGTTTGTGTTGTACACTTAAAGCTCAGCGTTTCGTATATANGATGATCCGAGATGGAGA
TGATCAGTTTTGCATAAGCTCTGTTTTGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17474.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis