Browse Element(s) Details


Os.37762.2.S1_x_at

Description gb:NM_189353.1
DB_XREF= gi:34905789
GEN=P0401G10.21
TID=Os.37762.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37762 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glucose inhibited division protein A (P0401G10.21), mRNA.
PROD=putative glucose inhibited division protein A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7298011/11Glucose-inhibited division protein A, putative, expressed
LOC_Os02g118401/11Coatomer WD associated domain containing protein, expressed
LOC_Os02g118301/11Coatomer beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030126cellular_componentCOPI vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37762.2.S1_x_at--504--7351Chr01:42657807..42657831 (25 bp)
GTGAATTTGCTGCTGCGGTTACCTC
LOC_Os01g72980
Os.37762.2.S1_x_at--758--9031Chr01:42657794..42657818 (25 bp)
TGCGGTTACCTCTGTATCCAACCAA
LOC_Os01g72980
Os.37762.2.S1_x_at--370--5311Chr01:42657631..42657655 (25 bp)
GAAGGTTTTATAGCACGGCAGCAAA
LOC_Os01g72980
Os.37762.2.S1_x_at--299--5951Chr01:42657204..42657228 (25 bp)
GAGCACAAGAAGCTTCCTGAAGACT
LOC_Os01g72980
Os.37762.2.S1_x_at--877--5611Chr01:42657163..42657187 (25 bp)
GACAAACCTGTCACTTGAAGCTCGT
LOC_Os01g72980
Os.37762.2.S1_x_at--209--7771Chr01:42656733..42656757 (25 bp)
GGTGAGCCCAGCTGATATGACTGTT
LOC_Os01g72980
Os.37762.2.S1_x_at--366--8953Chr02:6136175..6136505 (25 bp)
TGACTGTTCTTCTCATTTGGATGGA
LOC_Os02g11840
Os.37762.2.S1_x_at--170--10251Chr01:42656701..42656725 (25 bp)
TTTGGATGGAGAGCAACCGTCGCAT
LOC_Os01g72980
Os.37762.2.S1_x_at--222--1791Chr01:42656686..42656710 (25 bp)
ACCGTCGCATGGCTAACTACAAGAG
LOC_Os01g72980
Os.37762.2.S1_x_at--1081--5091Chr01:42656653..42656677 (25 bp)
GCACGTTGAGATCTGCTGCGACCAA
LOC_Os01g72980
Os.37762.2.S1_x_at--548--4611Chr01:42656636..42656660 (25 bp)
GCGACCAAGGCAGATGATTCTTCAG
LOC_Os01g72980
Target Sequence 
GTGAATTTGCTGCTGCGGTTACCTCTGTATCCAACCAACCTGTAAAAGAATCATCTACACTTGAAGCCATACTGAAGAAG
CCACATGTACAGTATAAACTTCTTGACAAACATGGATATGGAAATGAACATTTGTCTCGAATTGAGAAAGAATGTGTGGA
GATTGATATTAAGTACGAAGGTTTTATAGCACGGCAGCAAAGTCAATTGCAGCAGATTGTAAATCAGGAGCACAAGAAGC
TTCCTGAAGACTTAGATTATCATTCAATGACAAACCTGTCACTTGAAGCTCGTGAGAAACTTTCAAAGGTAAGGCCACAA
ACAATAGGCCAGGCTAGCAGAATTGGCGGGGTGAGCCCAGCTGATATGACTGTTCTTCTCATTTGGATGGAGAGCAACCG
TCGCATGGCTAACTACAAGAGACAGCAAAGCACGTTGAGATCTGCTGCGACCAAGGCAGATGATTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37762.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis