Browse Element(s) Details


Os.43012.1.A1_at

Description gb:CF277981
DB_XREF= gi:33655367
DB_XREF=14ETL--03-L11.g1
CLONE=14ETL--03-L11
TID=Os.43012.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphatidylserine decarboxylase (P0401G10.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7294011/11Phosphatidylserine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0004609molecular_functionphosphatidylserine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43012.1.A1_at--300--5351Chr01:42631025..42631049 (25 bp)
GAAGAGGGTGACTACGTCCACAAAG
LOC_Os01g72940
Os.43012.1.A1_at--600--6511Chr01:42630904..42630928 (25 bp)
GATATTTCGCTTTTGGAGGGAGCAC
LOC_Os01g72940
Os.43012.1.A1_at--1072--3111Chr01:42630737..42630761 (25 bp)
AATTTGACGCTGATCTTCTGGCCAA
LOC_Os01g72940
Os.43012.1.A1_at--33--4431Chr01:42630708..42630732 (25 bp)
GCCAGATCACTGGAAACTCTCGTCT
LOC_Os01g72940
Os.43012.1.A1_at--1110--1371Chr01:42630672..42630696 (25 bp)
AGACTGGGCGTCTCCACAAGGAACA
LOC_Os01g72940
Os.43012.1.A1_at--347--6411Chr01:42630645..42630669 (25 bp)
GATCTGCAACCTCAAGAGCTAGAGA
LOC_Os01g72940
Os.43012.1.A1_at--784--2991Chr01:42630620..42630644 (25 bp)
AATGTTCGCTTGAATGATGTGCCAA
LOC_Os01g72940
Os.43012.1.A1_at--905--5051Chr01:42630536..42630560 (25 bp)
GCAGCTTCCATGCTTATGTTAGTTC
LOC_Os01g72940
Os.43012.1.A1_at--172--3111Chr01:42630498..42630522 (25 bp)
AATAGTTGGCTTCTTGTTTGGATGA
LOC_Os01g72940
Os.43012.1.A1_at--46--6611Chr01:42630475..42630499 (25 bp)
GATTGGATCCACTCTGTGAATTCTG
LOC_Os01g72940
Os.43012.1.A1_at--548--2131Chr01:42630393..42630417 (25 bp)
ACAGTCACTGTATCTTTGTTAGGAT
LOC_Os01g72940
Target Sequence 
GAAGAGGGTGACTACGTCCACAAAGGAGATGAGTTTGGATATTTCGCTTTTGGAGGGAGCACAGTAATATGCGTCTTTGA
GAAGGATGCAATAGAATTTGACGCTGATCTTCTGGCCAATAGTGCCAGATCACTGGAAACTCTCGTCTCCGTCGGCATGA
GACTGGGCGTCTCCACAAGGAACAGNGATCTGCAACCTCAAGAGCTAGAGAAATGTTCGCTTGAATGATGTGCCAATATT
TTGCATGCAGNAAGNTTTTTTTTTTCCGAGGATGACACGAAGAAAGGTTGAAAGTAGCAGCTTCCATGCTTATGTTAGTT
CAATAGGTTGTGTTAATAGTTGGCTTCTTGTTTGGATGATTGGATCCACTCTGTGAATTCTGTAAAGAAANTGTACATCG
GGACACNATTCNNNTTTGAATTTTTGTCCCCCATACCTTACAGTCACTGTATCTTTGTTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43012.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis