Browse Element(s) Details


Os.37762.1.S1_at

Description gb:AK100099.1
DB_XREF= gi:32985308
TID=Os.37762.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucose inhibited division protein A (P0401G10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004D21, full insert sequence.
FL= gb:AK105000.2 gb:AK100099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7298010/11Glucose-inhibited division protein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37762.1.S1_at--309--1711Chr01:42656539..42656563 (25 bp)
ACCACTGGACTTTTCTGAGCCAAAA
LOC_Os01g72980
Os.37762.1.S1_at--517--1691Chr01:42656522..42656546 (25 bp)
AGCCAAAAATGTGTACTCTCTGAAG
LOC_Os01g72980
Os.37762.1.S1_at--647--5351Chr01:42656501..42656525 (25 bp)
GAAGATAATTTCCAGACGCCTGTGG
LOC_Os01g72980
Os.37762.1.S1_at--133--7531Chr01:42656480..42656504 (25 bp)
GTGGAAGAGTTATACAGGACATGCA
LOC_Os01g72980
Os.37762.1.S1_at--1092--10831Chr01:42656426..42656450 (25 bp)
TTGGTGGTGGCCTCTGTCAGTTATG
LOC_Os01g72980
Os.37762.1.S1_at--737--8731Chr01:42656412..42656436 (25 bp)
TGTCAGTTATGGTGTTTCTCCCCTA
LOC_Os01g72980
Os.37762.1.S1_at--1049--6831Chr01:42656399..42656423 (25 bp)
GTTTCTCCCCTACGACGCTGAATTG
LOC_Os01g72980
Os.37762.1.S1_at--52--9751Chr01:42656245..42656269 (25 bp)
TAATTCGCGAATGCAAGGGAGCAAT
LOC_Os01g72980
Os.37762.1.S1_at--3--6171Chr01:42656165..42656189 (25 bp)
GAGGTTGCAGTATCACTGTGTCCTA
LOC_Os01g72980
Os.37762.1.S1_at--19--7451Chr01:42656148..42656172 (25 bp)
GTGTCCTATCACAGAAGAGGTTGCA
LOC_Os01g72980
Os.37762.1.S1_at--1049--5351Chr01:42656135..42656159 (25 bp)
GAAGAGGTTGCAGTGTCTTTGTGTC
NONE
Target Sequence 
ACCACTGGACTTTTCTGAGCCAAAAATGTGTACTCTCTGAAGATAATTTCCAGACGCCTGTGGAAGAGTTATACAGGACA
TGCANNNNNNNNNNNNNNNNTCAAGGCACCTTTTGCTACTTGAAGGAAGTTGGTGGTGGCCTCTGTCAGTTATGGTGTTT
CTCCCCTACGACGCTGAATTGCTGATGTGGTTTTAGAATGTCGGATCGTATTGGTAGGATTTACTATATCTTTATAGTGG
ATAAGAATGTAAAGAGCGACAAAAATGAAAGTGGTAGAGCAGAGTAGCAATGTTTATGTATATATACATCTAATTCGCGA
ATGCAAGGGAGCAATGTCATTTACAGAGAAGTGAATGGTGTATGTAATNNGTAAACAGAATGAGTATAAAGAGGTTGCAG
TATCACTGTGTCCTATCACAGAAGAGGTTGCAGTGTCTTTGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis