Browse Element(s) Details


Os.5845.1.S1_at

Description gb:AK108183.1
DB_XREF= gi:32993392
TID=Os.5845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B04, full insert sequence.
FL= gb:AK108183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5845.1.S1_at--1048--2211Chr01:42644193..42644217 (25 bp)
ACAAGCTTGGTATCAGTGGGTTCAT
LOC_Os01g72960
Os.5845.1.S1_at--613--6491Chr01:42644220..42644244 (25 bp)
GATAGCTTCCATTTTATGCCTCGTT
LOC_Os01g72960
Os.5845.1.S1_at--671--8911Chr01:42644246..42644270 (25 bp)
TGAGCAGTCTTCATCTGACCATTTG
LOC_Os01g72960
Os.5845.1.S1_at--893--8912Chr11:15876301..15876634 (25 bp)
TGACCATTTGTCTCAGTTCCTGTAC
NONE
Os.5845.1.S1_at--134--6711Chr01:42644276..42644300 (25 bp)
GTTCCTGTACTCTGTAAGACGATGT
LOC_Os01g72960
Os.5845.1.S1_at--859--7851Chr01:42644315..42644339 (25 bp)
GGTAGTAGCAGGTTTCACCCACATT
LOC_Os01g72960
Os.5845.1.S1_at--1081--10511Chr01:42644328..42644352 (25 bp)
TTCACCCACATTGATAGACTTCCTG
LOC_Os01g72960
Os.5845.1.S1_at--1097--5671Chr01:42644344..42644368 (25 bp)
GACTTCCTGGTTCTTGATACAATTT
LOC_Os01g72960
Os.5845.1.S1_at--637--1111Chr01:42644374..42644398 (25 bp)
AGTGTAATGTCAGCCATCAGTTCAT
LOC_Os01g72960
Os.5845.1.S1_at--417--7151Chr01:42644489..42644513 (25 bp)
GTCTATCTAACCTGAAACCTGTGCT
LOC_Os01g72960
Os.5845.1.S1_at--741--2371Chr01:42644503..42644527 (25 bp)
AAACCTGTGCTAGCTTTGAGATAAC
LOC_Os01g72960
Target Sequence 
ACAAGCTTGGTATCAGTGGGTTCATGGGATAGCTTCCATTTTATGCCTCGTTTTGAGCAGTCTTCATCTGACCATTTGTC
TCAGTTCCTGTACTCTGTAAGACGATGTTTCCATCTGGTAAAGGTAGTAGCAGGTTTCACCCACATTGATAGACTTCCTG
GTTCTTGATACAATTTGATGTAGTGTAATGTCAGCCATCAGTTCATCACTANTGGTTAGACTGAAGATCGCTGTGACTTG
AGTTTGTAGAGAAAACAGATTGTTCCTAAGTGCATATGTTTGTCACAAGATTATATGTCTATCTAACCTGAAACCTGTGC
TAGCTTTGAGATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis