Browse Element(s) Details


Os.20750.1.S1_at

Description gb:CB635910
DB_XREF= gi:29630901
DB_XREF=OSIIEb16M14.r
CLONE=OSIIEb16M14
TID=Os.20750.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.20750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) bzip-like transcription factor-like (P0401G10.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g729709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72950Os.15864.1.S1_s_at11/111+42639032..42640425expressed protein
LOC_Os01g72960Os.5845.1.S1_at11/111+42642112..42644527expressed protein
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20750.1.S1_at--235--7051Chr01:42655362..42655386 (25 bp)
GTAAAACATGCCCATCTTGCAGCTT
LOC_Os01g72970
Os.20750.1.S1_at--865--8691Chr01:42655415..42655439 (25 bp)
TGTGCTGCACCAGATCGTCAGCTTC
LOC_Os01g72970
Os.20750.1.S1_at--195--9671Chr01:42655432..42655456 (25 bp)
TCAGCTTCTCCCAGGAAAATGTGCA
LOC_Os01g72970
Os.20750.1.S1_at--848--2211Chr01:42655464..42655488 (25 bp)
ACAAGCATCAGAACCCGAGGTGCCC
LOC_Os01g72970
Os.20750.1.S1_at--358--3331Chr01:42655494..42655518 (25 bp)
CACTGACTGCCGAGAAATGGGTTTT
LOC_Os01g72970
Os.20750.1.S1_at--1001--1011Chr01:42655546..42655570 (25 bp)
AGGTTCAACAGCTTGTTGCATGCAC
LOC_Os01g72970
Os.20750.1.S1_at--410--6791Chr01:42655693..42655717 (25 bp)
GTTAGTGTTATCCATAGATTCTTAC
LOC_Os01g72970
Os.20750.1.S1_at--797--1251NONE
AGATTCTTACTGATATCCAACTCAC
NONE
Os.20750.1.S1_at--1091--6491NONE
GATATCCAACTCACCTATGATGTTA
NONE
Os.20750.1.S1_at--631--10211Chr01:42655763..42655787 (25 bp)
TATTCTTACTGTTGTCTGACTCTTT
LOC_Os01g72970
Os.20750.1.S1_at--362--1311Chr01:42655848..42655872 (25 bp)
AGATGTTACTCATTTATTCTGTACA
LOC_Os01g72970
Target Sequence 
GTAAAACATGCCCATCTTGCAGCTTCAGCTACTCTACCAGTCGGNTTGGTCCCTGTGCTGCACCAGATCGTCAGCTTCTC
CCAGGAAAATGTGCAAAAGTACACAAGCATCAGAACCCGAGGTGCCCGGGTCCACTGACTGCCGAGAAATGGGTTTTNCA
CAGAAGTGTGTGATAGATGATCAAAGGTTCAACAGCTTGTTGCATGCACNAAAGGAGAANTNTTTTTGGTTGCTNGTCCT
GAATGAGNNACANGTGNCTGGGATTCTTTTNNTAGAGTAATTGGTTTAANTTTGGGGTTTAGGCNANTTCAGTTCTTACN
ANGTGGACNGGTGGTAGATAGAAAGTTAGTGTTATCCATAGATTCTTACTGATATCCAACTCACCTATGATGTTAATGTT
ATCGATAGACCATATATTCTTACTGTTGTCTGACTCTTTGCTNAAATTGCTGANAGCTGAGTACAGNGAGTAGACTAATG
ATGTATTATTGAGAAGTTTCAGATGTTACTCATTTATTCTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis