Browse Element(s) Details


OsAffx.11835.1.S1_x_at

Description tigr:9629.m07225
TID=OsAffx.11835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7300011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11835.1.S1_x_at--791--6651Chr01:42679521..42679613 (25 bp)
GTTGATGCAAGCTACTATCCTCTTT
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--1017--791Chr01:42679472..42679496 (25 bp)
ATGGGCCATGGGATGCGATGCAACA
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--722--2471Chr01:42679451..42679475 (25 bp)
AACACTTCGATGACTGTATTCCTGA
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--1043--10171Chr01:42679435..42679459 (25 bp)
TATTCCTGACAGAGCTTTTGACAAT
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--40--5571Chr01:42679152..42679176 (25 bp)
GAAAGAGGCTGCATTTGCCCTTGCA
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--703--5071Chr01:42679130..42679154 (25 bp)
GCAGCCCTTATGGAAATACCTTCTC
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--1030--591Chr01:42678979..42679003 (25 bp)
ATGCGGGTCATGTGGCCAGTCATCT
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--571--8431Chr01:42678966..42678990 (25 bp)
GGCCAGTCATCTGAGGATTCTTCCT
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--101--6571Chr01:42678951..42678975 (25 bp)
GATTCTTCCTCCTCCAAACAAAGTT
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--309--9731Chr01:42678742..42678766 (25 bp)
TCAAGGTTTGCCCAATCTGCTTAAC
LOC_Os01g73000
OsAffx.11835.1.S1_x_at--76--851Chr01:42678705..42678728 (24 bp)
ATGGCTTTTCAATGCGGTCACCTGA
LOC_Os01g73000
Target Sequence 
GTTGATGCAAGCTACTATCCTCTTTCAATTGTGATGGTTGGGGTGGGAGATGGGCCATGGGATGCGATGCAACACTTCGA
TGACTGTATTCCTGACAGAGCTTTTGACAATTTTCAGTTTGTGAACTTCACAGAGATTATGTCAACAAGTAAGGATATGC
CAAAGAAAGAGGCTGCATTTGCCCTTGCAGCCCTTATGGAAATACCTTCTCAATATAAAGCAACTCAAGGCCTCCGACCA
CTGGAGAAGCATGCGGGTCATGTGGCCAGTCATCTGAGGATTCTTCCTCCTCCAAACAAAGTTCTTGAGAACGACAACGC
TGCAGCCTCACGTCCTCCAACTGCAAGCTCCCAGTCAACTGGCTTCGGAAAGAATACCACTGATGAGCAGAACTGTGGCA
TAACTCTTATTATTTTCTTTTATGGCATCATCAAGGTTTGCCCAATCTGCTTAACCAATCCAAAGGACATGGCTTTTCAA
TGCGGTCACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11835.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis