Browse Element(s) Details


OsAffx.13398.1.S1_at

Description tigr:9631.m04667
TID=OsAffx.13398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ubiquitin protein ligase, 5-partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g730401/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73060OsAffx.24024.1.S1_at11/111+42715728..42716910expressed protein
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13398.1.S1_at--844--3171Chr03:27209787..27209811 (25 bp)
AATTGTCCATGAACTGAGGCCTGGT
NONE
OsAffx.13398.1.S1_at--551--3051Chr03:27209601..27209717 (25 bp)
AATCGTCAGATACTGCCTTTTGCAA
NONE
OsAffx.13398.1.S1_at--104--1331Chr03:27209565..27209589 (25 bp)
AGAGGACTCGGTGATCTCATTTCAC
NONE
OsAffx.13398.1.S1_at--176--191Chr03:27209547..27209571 (25 bp)
ATTTCACCATCTTGGCTGAGCTTGT
NONE
OsAffx.13398.1.S1_at--74--9671Chr03:27209056..27209079 (24 bp)
TCAGCTGCTTTCAGGCGGATTACAG
NONE
OsAffx.13398.1.S1_at--934--7211Chr03:27208970..27208994 (25 bp)
GTCGATCTGTTAAACTCTTCTGGGA
NONE
OsAffx.13398.1.S1_at--739--2831Chr03:27207528..27207552 (25 bp)
AAGTTTGTGACAAGCTGTTCCCGAG
NONE
OsAffx.13398.1.S1_at--952--6691Chr03:27207512..27207536 (25 bp)
GTTCCCGAGCTCCATTACTTGGATT
NONE
OsAffx.13398.1.S1_at--1017--9031Chr03:27207479..27207503 (25 bp)
TGCAGCCTTCTTTCACAATTCATAA
NONE
OsAffx.13398.1.S1_at--930--7392Chr01:42705676..42705695 (20 bp)
GTGATGTTACACTTTGGGCTACAAT
LOC_Os01g73040
OsAffx.13398.1.S1_at--1066--10171Chr03:27207142..27207317 (25 bp)
TATAACACACTCAAGCTTCCAACAT
NONE
Target Sequence 
AATTGTCCATGAACTGAGGCCTGGTGGTAAAAACATCTCAGTTACAAATGAAAATAAATTGCACTATGTTCATGCTATAG
CAGACTACAAGCTCAATCGTCAGATACTGCCTTTTGCAAATGCATTTTACAGAGGACTCGGTGATCTCATTTCACCATCT
TGGCTGAGCTTGTTTAATGCTAACGAATTTAATCAGCTGCTTTCAGGCGGATTACAGGATTTTGATGTCGATGATCTTCG
GAACAACACCAAGTATACTGGTGGTTATACCGAGTCAAGTCGATCTGTTAAACTCTTCTGGGAGGTTATCAAAGGATTTA
AGCCAACAGAACGTTGCATGCTACTGAAGTTTGTGACAAGCTGTTCCCGAGCTCCATTACTTGGATTCAAGTATTTGCAG
CCTTCTTTCACAATTCATAAGGTTCCATGTGATGTTACACTTTGGGCTACAATTGGAGGCCAGGACGTGGATCGTCTTCC
ATCTGCTTCCACGTGCTATAACACACTCAAGCTTCCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis