Browse Element(s) Details


Os.27122.1.S1_a_at

Description gb:AK063388.1
DB_XREF= gi:32973406
TID=Os.27122.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0483G10.10 (P0483G10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G11, full insert sequence.
FL= gb:AK063388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7308011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73060OsAffx.24024.1.S1_at11/111+42715728..42716910expressed protein
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27122.1.S1_a_at--79--3531Chr01:42723509..42723533 (25 bp)
CATGAGATTTGGAAGCTAGTTGCTA
LOC_Os01g73080
Os.27122.1.S1_a_at--549--2791Chr01:42723374..42723397 (24 bp)
AAGATGAATTTCAATGATGCTTTGA
LOC_Os01g73080
Os.27122.1.S1_a_at--940--6331Chr01:42723359..42723383 (25 bp)
GATGCTTTGAAGGTAGTCTATGAAA
LOC_Os01g73080
Os.27122.1.S1_a_at--1119--1191Chr01:42723320..42723344 (25 bp)
AGTTTCAAATTTGCAGTGGAGGCTG
LOC_Os01g73080
Os.27122.1.S1_a_at--227--5631Chr01:42723284..42723308 (25 bp)
GACAAATTGTTTGGATTGGAATATA
LOC_Os01g73080
Os.27122.1.S1_a_at--3--8211Chr01:42723164..42723291 (25 bp)
GGAATATAGGTTCTCTATGTGCTCT
LOC_Os01g73080
Os.27122.1.S1_a_at--342--1011Chr01:42723157..42723179 (23 bp)
AGGTTCTCTATGTGCTCTAAGGATA
LOC_Os01g73080
Os.27122.1.S1_a_at--1145--7291Chr01:42723146..42723170 (25 bp)
GTGCTCTAAGGATATTTCTGGTGAT
LOC_Os01g73080
Os.27122.1.S1_a_at--45--10331Chr01:42722904..42722928 (25 bp)
TTTCATCACACTCAGACCATGTGTG
LOC_Os01g73080
Os.27122.1.S1_a_at--545--3751Chr01:42722894..42722918 (25 bp)
CTCAGACCATGTGTGGGTATGCGGC
LOC_Os01g73080
Os.27122.1.S1_a_at--689--791Chr01:42722862..42722886 (25 bp)
ATGGATATGGCGAAAAAGATTGGTT
LOC_Os01g73080
Target Sequence 
CATGAGATTTGGAAGCTAGTTGCTAAGCAAAAGATGAATTTCAATGATGCTTTGAAGGTAGTCTATGAAATGGATATGTT
TCATAGTTTCAAATTTGCAGTGGAGGCTGAACTAAATGGGGACAAATTGTTTGGATTGGAATATAGGTTCTCTATGTGCT
CTAAGGATATTTCTGGTGATGTTGAAGAGGGTAAAGCTCTANATTTGATTACAAAGGCAGTTTACAGAGAATTTCATCAC
ACTCAGACCATGTGTGGGTATGCGGCGAAGAAGATGGATATGGCGAAAAAGATTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27122.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis