Browse Element(s) Details


Os.5520.1.S1_at

Description gb:AK059165.1
DB_XREF= gi:32969183
TID=Os.5520.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0483G10.15 (P0483G10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E01, full insert sequence.
FL= gb:AK059165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7314011/11ubiquitin-fold modifier 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5520.1.S1_at--1156--1451Chr01:42748164..42748188 (25 bp)
AGAAGGGCTGCGACTCATTCGAACC
LOC_Os01g73140
Os.5520.1.S1_at--123--471Chr01:42748135..42748159 (25 bp)
ATCTCGTCTCGTCGAAGCGAGCGAA
LOC_Os01g73140
Os.5520.1.S1_at--9--5331Chr01:42748018..42748042 (25 bp)
GAAGGTGTCGTTCAAGATCATCCTC
LOC_Os01g73140
Os.5520.1.S1_at--913--4291Chr01:42747849..42747998 (25 bp)
CCTTCAAAGTGTTTAGCGTGCCCGA
LOC_Os01g73140
Os.5520.1.S1_at--424--8551Chr01:42746973..42746997 (25 bp)
TGGAGTTGGCATCAACCCACAGCAA
LOC_Os01g73140
Os.5520.1.S1_at--1100--2311Chr01:42746461..42746974 (25 bp)
AAAGTGCAGGCAATGTGTTTCTAAA
LOC_Os01g73140
Os.5520.1.S1_at--1043--2331Chr01:42746439..42746463 (25 bp)
AAAGCATGGCTCAGAGTTGCGCCTC
LOC_Os01g73140
Os.5520.1.S1_at--630--9591Chr01:42746416..42746440 (25 bp)
TCATTCCCCGCGATAGAGTTGGAGC
LOC_Os01g73140
Os.5520.1.S1_at--431--8491Chr01:42746389..42746413 (25 bp)
TGGCTGCGCCTTTCTAGATTCTATA
LOC_Os01g73140
Os.5520.1.S1_at--520--1151Chr01:42746336..42746360 (25 bp)
AGTCGATGTTGGGTGCTTGCTTGCT
LOC_Os01g73140
Os.5520.1.S1_at--448--6871Chr01:42746266..42746290 (25 bp)
GTATTTTCAACATGTTTGCCGGCTG
LOC_Os01g73140
Target Sequence 
AGAAGGGCTGCGACTCATTCGAACCGCGCATCTCGTCTCGTCGAAGCGAGCGAAACCACACGCGGCGCGTCGATCCCAAC
ACCACCAACGCAACCCCTACCCATGGCGGCGGCGGGCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCA
AGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTC
AAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACA
GCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAGTTGGAGCATTGGCTG
CGCCTTTCTAGATTCTATAGTTATAATTGAGAAACTTAACAGAATAAAGTCGATGTTGGGTGCTTGCTTGCTTGTATAAT
GTGACAAGTTGATGATAATTTATCGACAGTTTACCTGGTATTTTCAACATGTTTGCCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis