Browse Element(s) Details


Os.16558.1.S1_at

Description gb:AK109480.1
DB_XREF= gi:32994689
TID=Os.16558.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.16558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (P0483G10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A07, full insert sequence.
FL= gb:AK104277.1 gb:AK109480.1 gb:AK102172.1 gb:AK061131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7320011/11Peroxidase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16558.1.S1_at--886--2831Chr01:42769239..42769263 (25 bp)
AAGTCGACCCCACCATGGACAAGTG
LOC_Os01g73200
Os.16558.1.S1_at--799--10491Chr01:42769415..42769439 (25 bp)
TTCAACGCAACCACCAAGCCGATCG
LOC_Os01g73200
Os.16558.1.S1_at--614--2651Chr01:42769430..42769454 (25 bp)
AAGCCGATCGTCACCAAGTTCGCCG
LOC_Os01g73200
Os.16558.1.S1_at--162--5851Chr01:42769475..42769499 (25 bp)
GACCAGTACGTCTACTCCGTCGTCA
LOC_Os01g73200
Os.16558.1.S1_at--561--8251Chr01:42769536..42769560 (25 bp)
GGCAGATCCGCAAGCGCTGTTCGGT
LOC_Os01g73200
Os.16558.1.S1_at--768--9291Chr01:42769542..42769566 (25 bp)
TCCGCAAGCGCTGTTCGGTGTCCAA
LOC_Os01g73200
Os.16558.1.S1_at--1153--1771Chr01:42769584..42769608 (25 bp)
ACCGTGCTTGGTCCGTCGTGGAGAC
LOC_Os01g73200
Os.16558.1.S1_at--1088--7191Chr01:42769598..42769622 (25 bp)
GTCGTGGAGACCGTCGCTGAGGCCG
LOC_Os01g73200
Os.16558.1.S1_at--318--8831Chr01:42769615..42769639 (25 bp)
TGAGGCCGCCGAGAGCTTGGTGCTG
LOC_Os01g73200
Os.16558.1.S1_at--351--4931Chr01:42769629..42769653 (25 bp)
GCTTGGTGCTGTAGGGTGCTAACAA
LOC_Os01g73200
Os.16558.1.S1_at--1101--7691Chr01:42769642..42769666 (25 bp)
GGGTGCTAACAAGGATGGCTAGTTT
LOC_Os01g73200
Target Sequence 
AAGTCGACCCCACCATGGACAAGTGGTTCGCCGGCCACCTCAAGGTCACCTGCCCGGTGCTGAACACCAACGACACCACC
GTCAACGACATCCGGACGCCCAACACCTTCGACAACAAGTACTACGTCGACCTGCAAAACCGCCAGGGCCTCTTCACCTC
CGACCAGGGCCTCTTCTTCAACGCAACCACCAAGCCGATCGTCACCAAGTTCGCCGTCGACCAGTCGGCCTTCTTCGACC
AGTACGTCTACTCCGTCGTCAAGATGGGCATGATCGAGGTGCTCACCGGCTCGCAGGGGCAGATCCGCAAGCGCTGTTCG
GTGTCCAACGCCGCCGCCGCCGGCGACCGTGCTTGGTCCGTCGTGGAGACCGTCGCTGAGGCCGCCGAGAGCTTGGTGCT
GTAGGGTGCTAACAAGGATGGCTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis