Browse Element(s) Details


OsAffx.24026.1.S1_x_at

Description gb:NM_189381.1
DB_XREF= gi:34905845
GEN=P0483G10.27
TID=OsAffx.24026.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0483G10.27 (P0483G10.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7326011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed
LOC_Os01g73310Os.18675.1.S1_at11/111+42810921..42814292Actin-1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24026.1.S1_x_at--686--2591Chr01:42793957..42793981 (25 bp)
AACGACGGCGAGGACCATGGCAGCA
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--820--1511Chr01:42793981..42794005 (25 bp)
AGCAGCAAGAAGACCTCGCAGCAGG
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--142--1491Chr01:42793984..42794008 (25 bp)
AGCAAGAAGACCTCGCAGCAGGGCG
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--643--4631Chr01:42794015..42794039 (25 bp)
GCGATCAGGAGTACTCCCACAAGCA
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--376--411Chr01:42794018..42794042 (25 bp)
ATCAGGAGTACTCCCACAAGCAGCA
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--1151--2211Chr01:42794033..42794057 (25 bp)
ACAAGCAGCAGGAGCGCATGGCCGC
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--144--3411Chr01:42794038..42794062 (25 bp)
CAGCAGGAGCGCATGGCCGCAATTA
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--791--3491Chr01:42794049..42794073 (25 bp)
CATGGCCGCAATTATTCAGAAAGGG
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--763--9371Chr01:42794064..42794088 (25 bp)
TCAGAAAGGGCTCTCCCTAGTGGTT
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--338--5131Chr01:42795040..42795064 (25 bp)
GCACAAAGCGAAGGAGCAGTACGCC
LOC_Os01g73260
OsAffx.24026.1.S1_x_at--396--1531Chr01:42795054..42795078 (25 bp)
AGCAGTACGCCCCTGCGCCAGGATG
LOC_Os01g73260
Target Sequence
AACGACGGCGAGGACCATGGCAGCAGCAGCAAGAAGACCTCGCAGCAGGGCGGCGCCGGCGATCAGGAGTACTCCCACAA
GCAGCAGGAGCGCATGGCCGCAATTATTCAGAAAGGGCTCTCCCTAGTGGTTGNTNNNNANNANGGGCACAAAGCGAAGG
AGCAGTACGCCCCTGCGCCAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24026.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis