Browse Element(s) Details


Os.7689.1.S1_a_at

Description gb:AK067544.1
DB_XREF= gi:32977562
TID=Os.7689.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative syntaxin (P0483G10.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111B15, full insert sequence.
FL= gb:AK067544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7323011/11SNELIPTRC, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0016192biological_processvesicle-mediated transport
GO:0010008cellular_componentendosome membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005484molecular_functionSNAP receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7689.1.S1_a_at--389--6631Chr01:42776336..42776360 (25 bp)
GTTGAGCTTTCTAGACGACGGAACT
LOC_Os01g73230
Os.7689.1.S1_a_at--988--8171Chr01:42776317..42776341 (25 bp)
GGAACTGGATTGGTTCTGCTCGTAA
LOC_Os01g73230
Os.7689.1.S1_a_at--1066--10591Chr01:42775978..42776328 (25 bp)
TTCTGCTCGTAATCAGGTTGCTGCA
LOC_Os01g73230
Os.7689.1.S1_a_at--755--6091Chr01:42775927..42775951 (25 bp)
GAGTAATTCAACTTTCTCGGCGCAC
LOC_Os01g73230
Os.7689.1.S1_a_at--612--9451Chr01:42775911..42775935 (25 bp)
TCGGCGCACCAAGACATGGGCACAA
LOC_Os01g73230
Os.7689.1.S1_a_at--1109--7591Chr01:42775894..42775918 (25 bp)
GGGCACAAGCAGAAGTAACCACTAC
LOC_Os01g73230
Os.7689.1.S1_a_at--477--4331Chr01:42775486..42775510 (25 bp)
CCATACACGAAGAGCTGTCTGGACA
LOC_Os01g73230
Os.7689.1.S1_a_at--14--3291Chr01:42775255..42775277 (23 bp)
CAAACAGACTTGACTTCGTGCAGAA
LOC_Os01g73230
Os.7689.1.S1_a_at--71--1091Chr01:42774943..42774967 (25 bp)
AGGGCAGATTATGCTGATCCTCTTC
LOC_Os01g73230
Os.7689.1.S1_a_at--960--9571Chr01:42774923..42774947 (25 bp)
TCTTCCTTGTGGTTCTGTTCATTAT
LOC_Os01g73230
Os.7689.1.S1_a_at--920--10291Chr01:42774895..42774919 (25 bp)
TTTCGTGTTGGTGTTCTTGACATAA
LOC_Os01g73230
Target Sequence 
GTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGG
GAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATG
ACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCANGGATGAGGAACTTGATNGAGCTTNAGCGAA
AGTGTTCAAAGGATTNGGTGGTNGTAGGGCNTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAANNCGAC
CTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGG
CATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7689.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis