Browse Element(s) Details


OsAffx.13272.1.S1_at

Description tigr:9631.m03923
TID=OsAffx.13272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4079011/11hypothetical protein
LOC_Os01g732901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40770OsAffx.3463.1.S1_at11/113+22621331..22623646expressed protein
LOC_Os03g40780OsAffx.25458.1.S1_at11/113+22625469..22630287expressed protein
LOC_Os03g40780OsAffx.5900.1.S1_at1/113+22625469..22630287expressed protein
LOC_Os03g40790OsAffx.13272.1.S1_at11/113+22638605..22638883hypothetical protein
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein
LOC_Os03g40820OsAffx.8789.1.S1_at2/113+22648735..22651324retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40830Os.54563.1.S1_at11/113+22657624..22660140cucumisin-like serine protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13272.1.S1_at--349--3291Chr03:22638661..22638685 (25 bp)
CAAAGTAGAAGCTATTAGGCTATGC
LOC_Os03g40790
OsAffx.13272.1.S1_at--838--2831Chr03:22638663..22638687 (25 bp)
AAGTAGAAGCTATTAGGCTATGCGA
LOC_Os03g40790
OsAffx.13272.1.S1_at--348--1171Chr03:22638664..22638688 (25 bp)
AGTAGAAGCTATTAGGCTATGCGAG
LOC_Os03g40790
OsAffx.13272.1.S1_at--369--6951Chr03:22638665..22638689 (25 bp)
GTAGAAGCTATTAGGCTATGCGAGG
LOC_Os03g40790
OsAffx.13272.1.S1_at--874--10011Chr03:22638666..22638690 (25 bp)
TAGAAGCTATTAGGCTATGCGAGGC
LOC_Os03g40790
OsAffx.13272.1.S1_at--142--2711Chr03:22638669..22638693 (25 bp)
AAGCTATTAGGCTATGCGAGGCGGT
LOC_Os03g40790
OsAffx.13272.1.S1_at--112--1551Chr03:22638670..22638694 (25 bp)
AGCTATTAGGCTATGCGAGGCGGTT
LOC_Os03g40790
OsAffx.13272.1.S1_at--254--4871Chr03:22638671..22638695 (25 bp)
GCTATTAGGCTATGCGAGGCGGTTA
LOC_Os03g40790
OsAffx.13272.1.S1_at--623--8852Chr03:22638709..22638832 (25 bp)
TGATGATTTCTATGGGCAACTCAAT
LOC_Os03g40790
OsAffx.13272.1.S1_at--226--6291Chr03:22638710..22638833 (25 bp)
GATGATTTCTATGGGCAACTCAATA
LOC_Os03g40790
OsAffx.13272.1.S1_at--498--8831Chr03:22638712..22638835 (25 bp)
TGATTTCTATGGGCAACTCAATACA
LOC_Os03g40790
Target Sequence 
CAAAGTAGAAGCTATTAGGCTATGCGAGGCGGTTAATCCTACAATGGCTGATGATTTCTATGGGCAACTCAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis