Browse Element(s) Details


OsAffx.5900.1.S1_at

Description tigr:9636.m02213
TID=OsAffx.5900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2278011/11hypothetical protein
LOC_Os03g407801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22740OsAffx.940.1.S1_x_at1/118+13532890..13536571retrotransposon protein, putative, unclassified
LOC_Os08g22750NANA8+13544160..13546846hypothetical protein
LOC_Os08g22760OsAffx.22699.1.S1_x_at1/118+13547204..13554353retrotransposon protein, putative, unclassified
LOC_Os08g22770NANA8+13556311..13557535retrotransposon protein, putative, unclassified
LOC_Os08g22780OsAffx.5900.1.S1_at11/118+13557731..13563788hypothetical protein
LOC_Os08g22790OsAffx.10530.1.S1_at2/118+13568195..13575724retrotransposon protein, putative, unclassified
LOC_Os08g22790OsAffx.21171.3.S1_x_at1/118+13568195..13575724retrotransposon protein, putative, unclassified
LOC_Os08g22810OsAffx.31760.1.S1_at1/118+13577027..13579886retrotransposon protein, putative, unclassified
LOC_Os08g22820NANA8+13585921..13592585retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5900.1.S1_at--1112--4391Chr08:13558255..13558279 (25 bp)
GCCAAAATCATCTCACCTGCGGTGT
LOC_Os08g22780
OsAffx.5900.1.S1_at--985--9671Chr08:13558243..13558267 (25 bp)
TCACCTGCGGTGTATCTTGAACTAC
LOC_Os08g22780
OsAffx.5900.1.S1_at--11--3031Chr08:13558113..13558137 (25 bp)
AATCCACGCTTGATGAGATGACCAT
LOC_Os08g22780
OsAffx.5900.1.S1_at--371--8931Chr08:13558095..13558119 (25 bp)
TGACCATTGATTCTGTCCAAGCCAA
LOC_Os08g22780
OsAffx.5900.1.S1_at--841--9151Chr08:13558018..13558042 (25 bp)
TGCGAAGCCGAAATATCATCAGAAG
LOC_Os08g22780
OsAffx.5900.1.S1_at--345--5691Chr08:13557987..13558011 (25 bp)
GACTTGCTGATTTCCCAAGAGCCAT
LOC_Os08g22780
OsAffx.5900.1.S1_at--803--372Chr08:13557931..13557955 (25 bp)
ATCAAGCATCTTTCAGATCTGAGCA
LOC_Os08g22780
OsAffx.5900.1.S1_at--236--5951Chr08:13557911..13557935 (25 bp)
GAGCAAGTCCTTAAAAGTGATCCTT
LOC_Os08g22780
OsAffx.5900.1.S1_at--1--8191Chr08:13557886..13557910 (25 bp)
GGAACCAATGTAACCAATGCTCAAG
LOC_Os08g22780
OsAffx.5900.1.S1_at--690--7551Chr08:13557831..13557855 (25 bp)
GGGCTATATCGGCTACCAATAAGCT
LOC_Os08g22780
OsAffx.5900.1.S1_at--1147--151Chr08:13557791..13557815 (25 bp)
ATTATCTGCGCGCAACACTTGTAAT
LOC_Os08g22780
Target Sequence 
GCCAAAATCATCTCACCTGCGGTGTATCTTGAACTACATCGGTTCAAGTTAGAGAAAGCAAGGCAAAGGATTGCCGATAG
GCGTGAAAGGAAAGAGCTTGAAGCCACAATTCAAGCTAATCGGCAAACTATCAATGAAGAAAAATCCACGCTTGATGAGA
TGACCATTGATTCTGTCCAAGCCAATATTGATCGGCTGAAAACTCGTAGAACAGAACTTTTGGCTGAATTAGAAAAATGC
GAAGCCGAAATATCATCAGAAGAACAAAGACTTGCTGATTTCCCAAGAGCCATAGAAGAGCAAAGGTCCAAGATAAGGAA
ATCTATCAAGCATCTTTCAGATCTGAGCAAGTCCTTAAAAGTGATCCTTGGAACCAATGTAACCAATGCTCAAGCCATAG
ATGATATAGAACAAATTAGGCAGCGGGCTATATCGGCTACCAATAAGCTTGTATCTGGCAAGAAATTATCTGCGCGCAAC
ACTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis