Browse Element(s) Details


OsAffx.25458.1.S1_at

Description tigr:9631.m03922
TID=OsAffx.25458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 28681-31893
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4078011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40730NANA3+22597996..22600762retrotransposon protein, putative, unclassified
LOC_Os03g40740NANA3+22602046..22603484retrotransposon protein, putative, unclassified
LOC_Os03g40749NANA3+22604904..22605188hypothetical protein
LOC_Os03g40760Os.52238.1.S1_at3/113+22608654..22611556hypothetical protein
LOC_Os03g40760Os.49936.2.A1_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40760Os.33601.3.S1_x_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40760OsAffx.15708.1.S1_at1/113+22608654..22611556hypothetical protein
LOC_Os03g40770OsAffx.3463.1.S1_at11/113+22621331..22623646expressed protein
LOC_Os03g40780OsAffx.25458.1.S1_at11/113+22625469..22630287expressed protein
LOC_Os03g40780OsAffx.5900.1.S1_at1/113+22625469..22630287expressed protein
LOC_Os03g40790OsAffx.13272.1.S1_at11/113+22638605..22638883hypothetical protein
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein
LOC_Os03g40820OsAffx.8789.1.S1_at2/113+22648735..22651324retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25458.1.S1_at--271--6431Chr03:22626122..22626146 (25 bp)
GATCTTAGTTAAGCATGTCTCCAGA
LOC_Os03g40780
OsAffx.25458.1.S1_at--103--1531Chr03:22626014..22626038 (25 bp)
AGCAGATCTGTCTGACATCCTTGTC
LOC_Os03g40780
OsAffx.25458.1.S1_at--382--3531Chr03:22625999..22626023 (25 bp)
CATCCTTGTCAAGCGTTCCATGAAG
LOC_Os03g40780
OsAffx.25458.1.S1_at--779--2651Chr03:22625967..22625991 (25 bp)
AAGCCAAGCTGGCTTCTTCTGCTGC
LOC_Os03g40780
OsAffx.25458.1.S1_at--226--2131Chr03:22625929..22625953 (25 bp)
ACAGGCAGCTTTAATCCAGTCCAAG
LOC_Os03g40780
OsAffx.25458.1.S1_at--475--671Chr03:22625839..22625863 (25 bp)
ATGAAGCCTCATCTCTCGAAAATTG
LOC_Os03g40780
OsAffx.25458.1.S1_at--790--8771Chr03:22625587..22625611 (25 bp)
TGTTTCACATATACACTTCCAGCTC
LOC_Os03g40780
OsAffx.25458.1.S1_at--1086--971Chr03:22625560..22625584 (25 bp)
AGGAGAGAGCATGCCGTCGTCATAT
LOC_Os03g40780
OsAffx.25458.1.S1_at--329--7211Chr03:22625545..22625569 (25 bp)
GTCGTCATATTCTCTATGCCTGTAT
LOC_Os03g40780
OsAffx.25458.1.S1_at--501--591Chr03:22625530..22625554 (25 bp)
ATGCCTGTATATTCTACTACTGGTA
LOC_Os03g40780
OsAffx.25458.1.S1_at--792--5251Chr03:22625501..22625525 (25 bp)
GAACGTTAATTCTGGGATCTTCATA
LOC_Os03g40780
Target Sequence 
GATCTTAGTTAAGCATGTCTCCAGACTTGAAAAGGAGAAGATGGAGCATGGAAAGAGCGGTGATATGATCTTTCTAAAGA
AGAATGACTCAAAATGCACAAATGAAGAAGCAGATCTGTCTGACATCCTTGTCAAGCGTTCCATGAAGCTTGAGCAAGCC
AAGCTGGCTTCTTCTGCTGCTGAAGAAACACTGACAGGCAGCTTTAATCCAGTCCAAGAGCGCAGAAGGGCACGTGAGAA
GGAACTTATGGATGCATGGGGAGGAGTGGGTCTAGGGAACTCCATGAAGCCTCATCTCTCGAAAATTGAGAAGGACAAGG
TTGCGTGGAGAAAAGCTGAGGAGGAACAGAAGCAGATGTGTGCTGCAAATGAGCTATAACCATAGCTCACAATATTTCTA
CTGGATTTTACTGTATGTACTGTTTGTTGTTTCACATATACACTTCCAGCTCGGAGGAGAGAGCATGCCGTCGTCATATT
CTCTATGCCTGTATATTCTACTACTGGTAAAGTGAACGTTAATTCTGGGATCTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis