Browse Element(s) Details


Os.15262.1.S1_at

Description gb:AK073846.1
DB_XREF= gi:32983869
TID=Os.15262.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein S10 (P0483G10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070I05, full insert sequence.
FL= gb:AK073846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7316011/1140S ribosomal protein S10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15262.1.S1_at--1036--9191Chr01:42753382..42753406 (25 bp)
TGCCATCTGAGGTTGTGCCTAACAC
LOC_Os01g73160
Os.15262.1.S1_at--690--3791Chr01:42752800..42752824 (25 bp)
CTCGCTTTGAGGGTGACAGGCCCAG
LOC_Os01g73160
Os.15262.1.S1_at--1069--4351Chr01:42752744..42752768 (25 bp)
CCACGTGGTGCTCCAGGTGATTTTG
LOC_Os01g73160
Os.15262.1.S1_at--61--7731Chr01:42752271..42752295 (25 bp)
GGTGGCGCATCTTCCATGGAGTAAA
LOC_Os01g73160
Os.15262.1.S1_at--1049--8111Chr01:42752237..42752261 (25 bp)
GGACGGAGCATATTGTTTTGCCCAA
LOC_Os01g73160
Os.15262.1.S1_at--507--851Chr01:42752213..42752237 (25 bp)
ATGGCTTATGAGATGCAATGCGCGG
LOC_Os01g73160
Os.15262.1.S1_at--709--6151Chr01:42752120..42752144 (25 bp)
GAGGTTGTTCTAGACATGGCTGTGT
LOC_Os01g73160
Os.15262.1.S1_at--559--4732Chr10:5702203..5702310 (24 bp)
GCTGTGTTATGCCTTTTGTTCTGTT
NONE
Os.15262.1.S1_at--125--6731Chr01:42752085..42752109 (25 bp)
GTTCTGTTAGATATCACTCTCGAAA
LOC_Os01g73160
Os.15262.1.S1_at--521--6611Chr01:42752053..42752077 (25 bp)
GTTGGTTTGACCGAGAATCTTTTAG
LOC_Os01g73160
Os.15262.1.S1_at--599--5951Chr01:42752020..42752044 (25 bp)
GAGCAAGCTGCCATTTAATCAAAAA
LOC_Os01g73160
Target Sequence 
TGCCATCTGAGGTTGTGCCTAACACCCTCAAGAAGTCTGCCAAGCCCCCGTCTCGCCCATTCGGCTCTGGCCCTCCTGGT
GACCGCCCCAGAGGCCCGCCTCGCTTTGAGGGTGACAGGCCCAGGTTTGGTGACAGGGATGGTTACAGGGGTGGCCCACG
TGGTGCTCCAGGTGATTTTGGTGGCGAGAAGGGTGGTGCTCCAGCTGAGTTCCAGCCATCTTTTAGGGGTAGCAGACCTG
GCTTTGGTCGTGGCGGTGGTGGCGCATTCGGTGGTGGCGCATCTTCCATGGAGTAAAGCTTGATCGGGACGGAGCATATT
GTTTTGCCCAATGGCTTATGAGATGCAATGCGCGGGGGTCGTCTTCACTGTTGGTCTTTGAATTGTGGGAACAATGAGAA
TTTTTGTTTATGAAATTGTAGCTGAGGTTGTTCTAGACATGGCTGTGTTATGCCTTTTGTTCTGTTAGATATCACTCTCG
AAATGAATCTGTTGGTTTGACCGAGAATCTTTTAGAATGTTATGAGCAAGCTGCCATTTAATCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis