Browse Element(s) Details


Os.18681.1.S1_at

Description gb:AK067659.1
DB_XREF= gi:32977677
TID=Os.18681.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.18681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0483G10.13 (P0483G10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114K13, full insert sequence.
FL= gb:AK067659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7312011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73060OsAffx.24024.1.S1_at11/111+42715728..42716910expressed protein
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0048316biological_processseed development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18681.1.S1_at--791--10631Chr01:42741704..42741728 (25 bp)
TTCGCCCATATGCAGTAATTCAGTT
LOC_Os01g73120
Os.18681.1.S1_at--440--131Chr01:42741687..42741711 (25 bp)
ATTCAGTTTGTTCCATGCATTGCAA
LOC_Os01g73120
Os.18681.1.S1_at--124--4951Chr01:42741671..42741695 (25 bp)
GCATTGCAATACCTGTGATGGCTAT
LOC_Os01g73120
Os.18681.1.S1_at--750--6891Chr01:42741631..42741655 (25 bp)
GTATACACATTCGAGCTATTGGCTG
LOC_Os01g73120
Os.18681.1.S1_at--526--5011Chr01:42741311..42741334 (24 bp)
GCAGGATTTTACCTCCTTGCTAAGG
LOC_Os01g73120
Os.18681.1.S1_at--61--6791Chr01:42741239..42741263 (25 bp)
GTTAGCGGTCATACTCTTAAGCATC
LOC_Os01g73120
Os.18681.1.S1_at--976--9011Chr01:42741207..42741231 (25 bp)
TGCAATGGTGCCTGTGTTCTTGGCA
LOC_Os01g73120
Os.18681.1.S1_at--621--2011Chr01:42741183..42741207 (25 bp)
ACTCATGCTGGCCAAAAGGACTGTT
LOC_Os01g73120
Os.18681.1.S1_at--197--10231Chr01:42740522..42740546 (25 bp)
TATTGCAGTTTCCACTACACCTGAA
LOC_Os01g73120
Os.18681.1.S1_at--462--8491Chr01:42740438..42740462 (25 bp)
TGGCACCGGCCAGCATAGAAACTAG
LOC_Os01g73120
Os.18681.1.S1_at--907--5791Chr01:42740387..42740411 (25 bp)
GACGCGTCATCGCTGCTAATCAGAA
LOC_Os01g73120
Target Sequence 
TTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACA
CATTCGAGCTATTGGCTGTGGGCAGCAGGATTTTACCTCCTTGCTAAGGTAGAAGAGGCCGCAGATAAACCTATATATAA
ATGGACCCATCAAATTGTTAGCGGTCATACTCTTAAGCATCTAGCTGCTGCAATGGTGCCTGTGTTCTTGGCACTCATGC
TGGCCAAAAGGACTGTTGAACCAGAAAGGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACT
CGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTTTCCACTACACCTGAACCATAGATGTATTGTTA
TTATTTTTCATGACTTTAATTTCTGTACACATGTAAGAGAAATGGCACCGGCCAGCATAGAAACTAGATCGATCAGTGTA
CATTACAATACGAGACGCGTCATCGCTGCTAATCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis