Browse Element(s) Details


OsAffx.24024.1.S1_at

Description tigr:9629.m07233
TID=OsAffx.24024.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7306011/11expressed protein
LOC_Os06g179201/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73060OsAffx.24024.1.S1_at11/111+42715728..42716910expressed protein
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24024.1.S1_at--191--3491Chr01:42716188..42716212 (25 bp)
CAGGAGTTGGTGTTTTCTTTCATAT
LOC_Os01g73060
OsAffx.24024.1.S1_at--336--10411Chr01:42716140..42716164 (25 bp)
TTATTAAGGCCTTCAGCACTTCTGC
LOC_Os01g73060
OsAffx.24024.1.S1_at--300--2991Chr01:42716059..42716083 (25 bp)
AATGTCTTGACTTTGCAGGTACGGT
LOC_Os01g73060
OsAffx.24024.1.S1_at--941--3472Chr06:10413518..10413663 (24 bp)
CAGGTACGGTTTTCCTCATGGACAA
LOC_Os06g17920
OsAffx.24024.1.S1_at--517--7931Chr01:42715989..42716013 (25 bp)
GGATTTCGAACCAGACTCAGGACAT
LOC_Os01g73060
OsAffx.24024.1.S1_at--645--8131Chr01:42715970..42715994 (25 bp)
GGACATTGGAGCCTACGACCGTTAT
LOC_Os01g73060
OsAffx.24024.1.S1_at--8--5831Chr01:42715954..42715978 (25 bp)
GACCGTTATGGTCCCAAATGATAAT
LOC_Os01g73060
OsAffx.24024.1.S1_at--1032--8831Chr01:42715936..42715960 (25 bp)
TGATAATTGACTTTCCACAGGATTT
LOC_Os01g73060
OsAffx.24024.1.S1_at--1127--71Chr01:42715816..42715840 (25 bp)
ATTGCCAAAACATTTCTCACCTTGC
LOC_Os01g73060
OsAffx.24024.1.S1_at--851--9071Chr01:42715794..42715818 (25 bp)
TGCTTATCCCAATCGAATGTGCTTT
LOC_Os01g73060
OsAffx.24024.1.S1_at--1104--771Chr01:42715778..42715802 (25 bp)
ATGTGCTTTGCTTCAGCTCTCAAGA
LOC_Os01g73060
Target Sequence 
CAGGAGTTGGTGTTTTCTTTCATATGCCAACTAATCATAATGCAATCTTTATTAAGGCCTTCAGCACTTCTGCTAGCTCG
CCCTTGCAAGCTGAATTAATAGCTTTACAGTTTGCTTTGGAGGTAGCAAAATGTCTTGACTTTGCAGGTACGGTTTTCCT
CATGGACAATGCAACGATTGCAGATACCATCAAGAAGAAGGATTTCGAACCAGACTCAGGACATTGGAGCCTACGACCGT
TATGGTCCCAAATGATAATTGACTTTCCACAGGATTTTATGAAGGNNNNNNNGNNNNNANGANANANNNANAAAATGCTT
GACAAATTAACAAAAGAAGCTAGACTTTTAGAAAGGGCAAATCCGATCTTTGATTGCCAAAACATTTCTCACCTTGCTTA
TCCCAATCGAATGTGCTTTGCTTCAGCTCTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis