Browse Element(s) Details


OsAffx.20736.2.S1_at

Description tigr:9629.m07239
TID=OsAffx.20736.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g731009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73060OsAffx.24024.1.S1_at11/111+42715728..42716910expressed protein
LOC_Os01g73070OsAffx.31902.1.S1_x_at7/111+42718613..42721688expressed protein
LOC_Os01g73070Os.52631.1.S1_x_at6/111+42718613..42721688expressed protein
LOC_Os01g73070OsAffx.26617.5.S1_x_at2/111+42718613..42721688expressed protein
LOC_Os01g73080Os.27122.1.S1_a_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.3.S1_x_at11/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.2.S1_at10/111+42720250..42728026expressed protein
LOC_Os01g73080Os.27122.1.S2_at9/111+42720250..42728026expressed protein
LOC_Os01g73090OsAffx.9743.2.S1_x_at11/111+42728596..42729150hypothetical protein
LOC_Os01g73100Os.50955.1.S1_at11/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.20736.2.S1_at9/111+42731290..42735291hypothetical protein
LOC_Os01g73100OsAffx.16528.1.S1_at1/111+42731290..42735291hypothetical protein
LOC_Os01g73110Os.29815.2.S1_x_at11/111+42738787..42739930expressed protein
LOC_Os01g73120Os.18681.1.S1_at11/111+42740316..42743438membrane protein, putative, expressed
LOC_Os01g73130NANA1+42744664..42745587Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os01g73140Os.5520.1.S1_at11/111+42746256..42748224ubiquitin-fold modifier 1 precursor, putative, expressed
LOC_Os01g73150Os.23226.1.S1_at11/111+42748520..42751712expressed protein
LOC_Os01g73150Os.51989.1.S1_at1/111+42748520..42751712expressed protein
LOC_Os01g73160Os.15262.1.S1_at11/111+42751999..4275420040S ribosomal protein S10, putative, expressed
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20736.2.S1_at--525--51Chr01:42733570..42733594 (25 bp)
ATTGATTTCGATTTGATTGCTCCTA
LOC_Os01g73100
OsAffx.20736.2.S1_at--226--10791Chr01:42733582..42733606 (25 bp)
TTGATTGCTCCTAAACGTTACTCCC
LOC_Os01g73100
OsAffx.20736.2.S1_at--637--2511Chr01:42733645..42733669 (25 bp)
AACATACATCTGAAGCTCTGCTCTG
LOC_Os01g73100
OsAffx.20736.2.S1_at--990--10431Chr01:42733696..42733720 (25 bp)
TTATGTTCCTGTGCTAGCTTCTGCC
LOC_Os01g73100
OsAffx.20736.2.S1_at--582--10011Chr01:42733710..42733734 (25 bp)
TAGCTTCTGCCTCTCTGGTTCTGAT
LOC_Os01g73100
OsAffx.20736.2.S1_at--1062--10591NONE
TTCTGATCATCTCATGTCGACCGGA
NONE
OsAffx.20736.2.S1_at--1084--2471Chr01:42734106..42734130 (25 bp)
AACACCGACAAAGCCTCATTCAGTA
LOC_Os01g73100
OsAffx.20736.2.S1_at--366--131Chr01:42734123..42734146 (24 bp)
ATTCAGTACCAGAGCGTTCTCCGGT
LOC_Os01g73100
OsAffx.20736.2.S1_at--331--10051NONE
TAGTTTCAGACGTTTGGCTCAGCAA
NONE
OsAffx.20736.2.S1_at--1032--9651Chr01:42735156..42735180 (25 bp)
TCAGCAATGTCACGAGTCACCAGGT
LOC_Os01g73100
OsAffx.20736.2.S1_at--127--7711Chr01:42735201..42735225 (25 bp)
GGGTCGATCCAAACATCAGACTGAC
LOC_Os01g73100
Target Sequence 
ATTGATTTCGATTTGATTGCTCCTAAACGTTACTCCCTCGCGCGCCATAAAATCCCACCTACAGGACAAGACAGAAACAT
ACATCTGAAGCTCTGCTCTGTACCTCCTCTCGTTGGTTCCTCTCCGTTATGTTCCTGTGCTAGCTTCTGCCTCTCTGGTT
CTGATCATCTCATGTCGACCGGAGGAGGCATCAACGGAGGATGGACTAGAGGAGATGAGAACGACAACACCAACGGAGGC
AACAACACCGACAAAGCCTCATTCAGTACCAGAGCGTTCTCCGGTCCACACGCCTTCTGCATTTCCATCATCATCGACCA
TGTCAGACCTTGTTCTGCAACATCTCTTCCATCAAGTCAAGCCCTAATAATTCAGATTAGTTTCAGACGTTTGGCTCAGC
AATGTCACGAGTCACCAGGTGGTTTACAAAAACTGGGAGGGGGTCGATCCAAACATCAGACTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20736.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis