Browse Element(s) Details


OsAffx.26617.5.S1_x_at

Description tigr:9629.m00173
TID=OsAffx.26617.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0261011/11Protein kinase domain containing protein
LOC_Os03g222503/11expressed protein
LOC_Os01g730702/11expressed protein
LOC_Os05g053902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0006260biological_processDNA replication
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26617.5.S1_x_at--542--54715Chr09:4499314..4499446 (25 bp)
GAACTGCCCCAGTTCGACAGCATGC
NONE
OsAffx.26617.5.S1_x_at--34--1231Chr01:868248..868473 (25 bp)
AGTTCGACAGCATGCCCCAGTTCGA
LOC_Os01g02610
OsAffx.26617.5.S1_x_at--460--5651Chr01:868243..868264 (22 bp)
GACAGCATGCCCCAGTTCGACAGTA
LOC_Os01g02610
OsAffx.26617.5.S1_x_at--30--93714Chr09:4499539..4499563 (25 bp)
TCGAACTGCCCCAGTTCGACAGTAC
NONE
OsAffx.26617.5.S1_x_at--51--11711Chr09:4499559..4499583 (25 bp)
AGTACCCTGTCGAACTGCCCCAGTT
NONE
OsAffx.26617.5.S1_x_at--364--791Chr01:867498..867522 (25 bp)
ATGGGCGAGGCTACGCGGTGCGGTC
LOC_Os01g02610
OsAffx.26617.5.S1_x_at--330--1539Chr09:19233345..19233369 (25 bp)
AGCAGGCCGCGGACAGAGTAGCGGA
NONE
OsAffx.26617.5.S1_x_at--721--3937Chr10:12779368..12779392 (25 bp)
CGGCGGCCAGCGAGTTTGGGAGGGA
NONE
OsAffx.26617.5.S1_x_at--294--6198Chr10:12779397..12779421 (25 bp)
GAGGCGGCCGGCGACCAAGAAACAA
NONE
OsAffx.26617.5.S1_x_at--1041--3216Chr12:774875..774899 (25 bp)
CAAGAAACAATCTCTTCCTCTGCCT
NONE
OsAffx.26617.5.S1_x_at--32--7519Chr10:12779455..12779479 (25 bp)
GTGGTGCCTCTCCTAGCATCGTCGG
NONE
Target Sequence 
GAACTGCCCCAGTTCGACAGCATGCCCCAGTTCGACAGTACCCTGTCGAACTGCCCCAGTTCGACAGTACCCTGTCGAAC
TGCCCCAGTTCGACAGTACCCTGTCGAACTGCCCCAGTTCGACAGGGGCTGCGGACGGAGGAGCCGCGCGCCGTGGCCGC
CGTCGTCATCGGCTCTCTACCGTCGTCGTCGCCATGGGCGAGGCTACGCGGTGCGGTCGTCCGGCGGCTGAGCGGAGGCA
GCGGAGCGCGGCGGCGGAGCGGCGAGCACGGATGCGGGCGGCGCAACGAGGGCGAGCGTGGCAACGGAGCAGCGGAAGGT
GCGAGCGCAGCGGCGGGTCGAGCAGTGGAGCGCGAGCAGGCCGCGGACAGAGTAGCGGAGCGCGAGCGCGCGGCAGAGCA
GCGGCGAGCGAGCGCGGCGGCCAGCGAGTTTGGGAGGGAGGGGGAGGCGGCCGGCGACCAAGAAACAATCTCTTCCTCTG
CCTCTTCCCCTTCTCCCGCCGGTGGTGCCTCTCCTAGCATCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26617.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis