Browse Element(s) Details


Os.33796.1.S1_x_at

Description gb:AK074011.1
DB_XREF= gi:32984034
TID=Os.33796.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0463F06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074L11, full insert sequence.
FL= gb:AK074011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0268010/11TAK33, putative, expressed
LOC_Os01g024105/11Protein kinase domain containing protein, expressed
LOC_Os01g026104/11Protein kinase domain containing protein
LOC_Os01g025903/11receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified
LOC_Os01g02670Os.46785.2.S1_x_at4/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.6133.1.S1_at2/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.30226.2.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.442.1.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33796.1.S1_x_at--49--6912Chr01:909102..909126 (25 bp)
GTATCCCGGAGCTTTGGCGTTATAT
LOC_Os01g02680
Os.33796.1.S1_x_at--213--8351Chr01:909087..909111 (25 bp)
GGCGTTATATCTGACAAATCCGATG
LOC_Os01g02680
Os.33796.1.S1_x_at--1022--5012Chr01:908984..909008 (25 bp)
GCAGGGCATACTACCCAGCATGGGT
LOC_Os01g02680
Os.33796.1.S1_x_at--400--1531Chr01:908968..908992 (25 bp)
AGCATGGGTGTATGACCAGCTGATA
LOC_Os01g02680
Os.33796.1.S1_x_at--248--4454Chr01:908879..908903 (25 bp)
GCCTTGTTGGGCTGTGGTGCATTCA
LOC_Os01g02680
Os.33796.1.S1_x_at--944--9691Chr01:908847..908871 (25 bp)
TCACACGATCGCCTGACGATGAGCG
LOC_Os01g02680
Os.33796.1.S1_x_at--271--7472Chr01:908798..908822 (25 bp)
GTGTGGATGCGCTGCAAGTGCCTCC
LOC_Os01g02680
Os.33796.1.S1_x_at--25--2851Chr01:908783..908807 (25 bp)
AAGTGCCTCCGAGACCATTTTTCTG
LOC_Os01g02680
Os.33796.1.S1_x_at--129--594Chr01:908733..908757 (25 bp)
ATGCCACCTCCACAAGTCATGGATT
LOC_Os01g02680
Os.33796.1.S1_x_at--1156--7114Chr01:908718..908742 (25 bp)
GTCATGGATTCTTACTTTCACTCCT
LOC_Os01g02680
Os.33796.1.S1_x_at--609--411Chr01:908537..908561 (25 bp)
ATGCTTAAAATTTTTTCCGTGTATG
NONE
Target Sequence 
GTATCCCGGAGCTTTGGCGTTATATCTGACAAATCCGATGTTTATAGCTTTGGAATGTTGTTGCTTGAGATGGCTGGAGG
TAGAAGGAATGCAGATCCAAATGCAAACTCAAATGCAAGCAGGGCATACTACCCAGCATGGGTGTATGACCAGCTGATAG
CAGATCAACAAGTTGATGAGATATCCAATGTTGCTGACATGCATGAGCTGGAGAGGAAGCTATGCCTTGTTGGGCTGTGG
TGCATTCAGATGAAATCACACGATCGCCTGACGATGAGCGAGGCAATAGAGATGCTCGAAGGGGGTGTGGATGCGCTGCA
AGTGCCTCCGAGACCATTTTTCTGCGATGGGGATGGCATTGGCAATGGCATGCCACCTCCACAAGTCATGGATTCTTACT
TTCACTCCTCCGAGCTTACTGCAATTTCAGAAGAGGACGATGGAATATCTGAATTAGCCAGTAGCTAGGCTGTGATGACA
ATGATGAATCTAGCTAGCAATTAGCGTTCATAAATAATGGTTGTTATTATTCCATATTCATCGATCCAACAATTGATATT
TACTAATGCTTAAAATTTTTTCCGTGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33796.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis