Browse Element(s) Details


Os.45516.2.S1_x_at

Description gb:NM_184102.1
DB_XREF= gi:34895297
GEN=P0698G03.25
TID=Os.45516.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45516 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0698G03.25), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0278011/11TAK33, putative, expressed
LOC_Os01g026802/11TAK33, putative, expressed
LOC_Os01g024102/11Protein kinase domain containing protein, expressed
LOC_Os01g026101/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45516.2.S1_x_at--1044--4874Chr01:966818..966842 (25 bp)
GCTTTGTGTCAGATAGGGCTTTACG
LOC_Os01g02780
Os.45516.2.S1_x_at--244--10111Chr01:966778..966802 (25 bp)
TATGGCTCCAGAGATGGCATGTCGT
LOC_Os01g02780
Os.45516.2.S1_x_at--630--8271Chr01:966763..966787 (25 bp)
GGCATGTCGTAGTTTTGGCGTCATA
LOC_Os01g02780
Os.45516.2.S1_x_at--638--9371Chr01:966648..966672 (25 bp)
TCGAGTAGGGCATACTACCCAGCAT
LOC_Os01g02780
Os.45516.2.S1_x_at--734--4173Chr01:966631..966655 (25 bp)
CCCAGCATGGGTGTATGACCAGCTT
LOC_Os01g02780
Os.45516.2.S1_x_at--586--4931Chr01:966538..966562 (25 bp)
GCTTGTTGTGTTTTGGTGCATCCAG
LOC_Os01g02780
Os.45516.2.S1_x_at--1061--8851Chr01:966454..966478 (25 bp)
TGATGCGTTGCAAGTGCCTCCGAGG
LOC_Os01g02780
Os.45516.2.S1_x_at--912--871Chr01:966432..966456 (25 bp)
AGGCCATTTTTCTGCGATGGAGATA
LOC_Os01g02780
Os.45516.2.S1_x_at--59--4291Chr01:966396..966420 (25 bp)
CCTCCTGTGCCTGTGATGGATTCAA
LOC_Os01g02780
Os.45516.2.S1_x_at--48--8571Chr01:966380..966404 (25 bp)
TGGATTCAATTTGCCTTTACTCCTC
LOC_Os01g02780
Os.45516.2.S1_x_at--274--10331Chr01:966365..966389 (25 bp)
TTTACTCCTCCGAGTTGACTGCGAT
LOC_Os01g02780
Target Sequence 
GCTTTGTGTCAGATAGGGCTTTACGAGGAACATTTGGGTATATGGCTCCAGAGATGGCATGTCGTAGTTTTGGCGTCATA
TCCAGCAAATCCGATGTTTATAGCTTTGGAATGCTGCTGCTTGAGATGGCTGGAGGTAGAAAGAACGCAGACCCAAATGC
AAACTCAAATTCGAGTAGGGCATACTACCCAGCATGGGTGTATGACCAGCTTATAGTAGATCAACAAGTTGATGAGATAT
CTAGTGCTATTGACATGCATGAGAAAGAGAGGAAGCTGTGGCTTGTTGTGTTTTGGTGCATCCAGATGAAATCATATGAT
CGGCCAACAATGAGTGAGGTCATAGAGATGCTCGAAGGGGATGTTGATGCGTTGCAAGTGCCTCCGAGGCCATTTTTCTG
CGATGGAGATAGCACGCCGCCTCCTCCTGTGCCTGTGATGGATTCAATTTGCCTTTACTCCTCCGAGTTGACTGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45516.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis