Browse Element(s) Details


OsAffx.8676.1.S1_at

Description gb:XM_354294.1
DB_XREF= gi:35190031
GEN=OJ1047_A06.21
TID=OsAffx.8676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g122304/11hypothetical protein
LOC_Os11g292004/11Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os03g318103/11hypothetical protein
LOC_Os06g371402/11expressed protein
LOC_Os09g230602/11hypothetical protein
LOC_Os10g138101/11Glycosyltransferase family 43 protein, expressed
LOC_Os01g352001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g141601/11transposon protein, putative, Pong sub-class, expressed
LOC_Os05g088801/11Zinc knuckle family protein
LOC_Os02g491301/11expressed protein
LOC_Os11g126201/11Leucine Rich Repeat family protein, expressed
LOC_Os03g129001/11Squalene monooxygenase, putative, expressed
LOC_Os08g319101/11expressed protein
LOC_Os06g062801/11galactosyltransferase family protein, putative, expressed
LOC_Os06g240101/11hypothetical protein
LOC_Os12g294891/11
LOC_Os01g027501/11receptor kinase LRK14, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006486biological_processprotein amino acid glycosylation
GO:0006810biological_processtransport
GO:0006979biological_processresponse to oxidative stress
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009934biological_processregulation of meristem organization
GO:0016126biological_processsterol biosynthesis
GO:0016192biological_processvesicle-mediated transport
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004506molecular_functionsqualene monooxygenase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005215molecular_functiontransporter activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8676.1.S1_at--968--1791Chr07:15425704..15425728 (25 bp)
ACCGCTCGTCATCCCTGAGAGCAAG
NONE
OsAffx.8676.1.S1_at--553--4131Chr07:15425702..15425726 (25 bp)
CGCTCGTCATCCCTGAGAGCAAGTT
NONE
OsAffx.8676.1.S1_at--308--4811Chr07:15425701..15425725 (25 bp)
GCTCGTCATCCCTGAGAGCAAGTTC
NONE
OsAffx.8676.1.S1_at--274--3791Chr07:15425700..15425724 (25 bp)
CTCGTCATCCCTGAGAGCAAGTTCA
NONE
OsAffx.8676.1.S1_at--15--9411Chr07:15425699..15425723 (25 bp)
TCGTCATCCCTGAGAGCAAGTTCAA
NONE
OsAffx.8676.1.S1_at--715--59542Chr12:23633723..23633850 (25 bp)
GAGCAAGTTCAATAACACACTGCGT
NONE
OsAffx.8676.1.S1_at--1008--51736Chr12:23633725..23633852 (25 bp)
GCAAGTTCAATAACACACTGCGTCT
NONE
OsAffx.8676.1.S1_at--906--32145Chr12:23633726..23633853 (25 bp)
CAAGTTCAATAACACACTGCGTCTT
NONE
OsAffx.8676.1.S1_at--997--28154Chr12:23633727..23633854 (25 bp)
AAGTTCAATAACACACTGCGTCTTG
NONE
OsAffx.8676.1.S1_at--1158--483197Chr12:13123475..13123562 (25 bp)
GCTACAAATCTCCTGCTATTGTACC
NONE
OsAffx.8676.1.S1_at--942--7991Chr07:15425432..15425456 (25 bp)
GGATGTGAGGAGAGACCAGGAACAC
NONE
Target Sequence 
ACCGCTCGTCATCCCTGAGAGCAAGTTCAATAACACACTGCGTCTTGAAGTCCGTGCTACAGCTGGCTACAAATCTCCTG
CTATTGTACCTGCTCTGAGAGATGGGGATGTGAGGAGAGACCAGGAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis