Browse Element(s) Details


Os.10031.1.S1_at

Description gb:AK063475.1
DB_XREF= gi:32973493
TID=Os.10031.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B01, full insert sequence.
FL= gb:AK063475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3514011/11MtN3/saliva family protein, expressed
LOC_Os07g122301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35110Os.7408.1.S1_at11/115+20763988..20767906Leucine Rich Repeat family protein, expressed
LOC_Os05g35120Os.26886.2.S1_s_at9/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.6.S1_s_at8/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.16467.1.S1_at7/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.3.S1_x_at6/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.3425.1.S1_at1/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35130OsAffx.4520.1.S1_at11/115+20784374..20784898hypothetical protein
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10031.1.S1_at--70--1911Chr05:20789994..20790018 (25 bp)
ACGTCGTGGTTCATCTACGGCTTGC
LOC_Os05g35140
Os.10031.1.S1_at--941--10591Chr05:20790033..20790147 (25 bp)
TTCGTCACGATTCCGAACGGGTGCG
LOC_Os05g35140
Os.10031.1.S1_at--725--411Chr05:20790186..20790210 (25 bp)
ATCTACCGCAACAACAAGGGCGCCG
LOC_Os05g35140
Os.10031.1.S1_at--794--2931Chr05:20790324..20790348 (25 bp)
AAGGCGGGCACCGAAGTGTAGCTCT
LOC_Os05g35140
Os.10031.1.S1_at--1100--5311Chr05:20790336..20790360 (25 bp)
GAAGTGTAGCTCTGGCGTGCGTCTC
LOC_Os05g35140
Os.10031.1.S1_at--905--4651Chr05:20790350..20790374 (25 bp)
GCGTGCGTCTCGAATCGGCTAAGAT
LOC_Os05g35140
Os.10031.1.S1_at--489--4331Chr05:20790361..20790385 (25 bp)
GAATCGGCTAAGATTTCCCGCGTGT
LOC_Os05g35140
Os.10031.1.S1_at--1044--191Chr05:20790373..20790397 (25 bp)
ATTTCCCGCGTGTGTTCTACTTCTA
LOC_Os05g35140
Os.10031.1.S1_at--700--3111Chr05:20790406..20790430 (25 bp)
AATATTAGCTAGACCCTTGCTGCTT
LOC_Os05g35140
Os.10031.1.S1_at--757--4311Chr05:20790420..20790444 (25 bp)
CCTTGCTGCTTTGATCTTTACTAGA
LOC_Os05g35140
Os.10031.1.S1_at--177--4572Chr07:6848123..6848147 (25 bp)
GCGCGCGATGGCAAATAGTTCTACA
LOC_Os07g12230
Target Sequence 
ACGTCGTGGTTCATCTACGGCTTGCTCGGCCGCGACCCCTTCGTCACGATTCCGAACGGGTGCGGGAGCTTTCTTGGCGC
CGTGCAGCTGGTGCTCTACGCCATCTACCGCAACAACAAGGGCGCCGGCGGCGGCAGCGGCGGCAAGCAGGCCGGCGACG
ACGACGTGGAGATGGCCGAGGGGAGGAACAACAAGGTCGCCGACGGCGGCGCCGCCGACGACGACTCGACGGCCGGCGGC
AAGGCGGGCACCGAAGTGTAGCTCTGGCGTGCGTCTCGAATCGGCTAAGATTTCCCGCGTGTGTTCTACTTCTACAAGTA
GTAATATTAGCTAGACCCTTGCTGCTTTGATCTTTACTAGAAAGGAGAGCGCGGCGCCACGCCGCGCGCGATGGCAAATA
GTTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis