Browse Element(s) Details


Os.12020.1.S1_at

Description gb:AK099540.1
DB_XREF= gi:32984749
TID=Os.12020.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032G17, full insert sequence.
FL= gb:AK065065.1 gb:AK099540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3517011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35120Os.26886.2.S1_s_at9/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.6.S1_s_at8/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.16467.1.S1_at7/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.3.S1_x_at6/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.3425.1.S1_at1/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35130OsAffx.4520.1.S1_at11/115+20784374..20784898hypothetical protein
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12020.1.S1_at--1017--331Chr05:20797786..20797810 (25 bp)
ATACAGTACTACTCTATCTGCTGCC
LOC_Os05g35170
Os.12020.1.S1_at--734--10792Chr09:6941861..6941880 (20 bp)
TTGTTGATGATTTACCTGCTGCTGC
NONE
Os.12020.1.S1_at--51--9111Chr05:20797711..20797735 (25 bp)
TGCTGCTGCTAATAACGGTGGCTTT
LOC_Os05g35170
Os.12020.1.S1_at--180--651Chr05:20797671..20797695 (25 bp)
ATGCAGTTCCCACTGTCATAACTAA
LOC_Os05g35170
Os.12020.1.S1_at--607--7491Chr05:20797525..20797549 (25 bp)
GTGGGATTCCATATGCTGGCAGTAC
LOC_Os05g35170
Os.12020.1.S1_at--665--2491Chr05:20797495..20797519 (25 bp)
AACAGATGTGTCTTCATGGCCACCT
LOC_Os05g35170
Os.12020.1.S1_at--436--5251Chr05:20797439..20797463 (25 bp)
GAATCTTTCTCGTGGACTGTTGCTG
LOC_Os05g35170
Os.12020.1.S1_at--678--7311Chr05:20797405..20797429 (25 bp)
GTGCTCGAACTGGTGGTCACTGCAA
LOC_Os05g35170
Os.12020.1.S1_at--302--10591Chr05:20797334..20797358 (25 bp)
TTCTCGATGGCGATGCTCTATGATC
LOC_Os05g35170
Os.12020.1.S1_at--1109--1671Chr05:20797298..20797322 (25 bp)
AGCCTGGCGCGCTACTGAGGATCAG
LOC_Os05g35170
Os.12020.1.S1_at--839--3431Chr05:20797276..20797300 (25 bp)
CAGATATTCGCTTTGTGTTACCTTA
LOC_Os05g35170
Target Sequence 
ATACAGTACTACTCTATCTGCTGCCTTTCCATCTGGTGACTCGCGTCCAACTATGCGCATTGTTGATGATTTACCTGCTG
CTGCTAATAACGGTGGCTTTGCTTCAAAACCCAGCATGCAGTTCCCACTGTCATAACTAAGTCCAGAACCGTTCTAGAGG
ACTCTGATACTGATGACCTAGTGGGATTCCATATGCTGGCAGTACTGCGCAACAGATGTGTCTTCATGGCCACCTGCTGC
NGCTCCGAGCTAAGCCAAACCTCGCTGAATCTTTCTCGTGGACTGTTGCTGGATTTACCAGTGCTCGAACTGGTGGTCAC
TGCAAGCATTGTGAGGCCAACAATGTACATTGTTTTGAAGGTTTGGCCTAGTTCTCGATGGCGATGCTCTATGATCCGAA
CNTGTCTAGCCTGGCGCGCTACTGAGGATCAGATATTCGCTTTGTGTTACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis