Browse Element(s) Details


OsAffx.22438.1.S1_at

Description tigr:9635.m01199
TID=OsAffx.22438.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1223011/11hypothetical protein
LOC_Os05g351504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22438.1.S1_at--1005--8932Chr07:6851199..6851223 (25 bp)
TGACGTGGACGCAGATCGCGCAGAG
LOC_Os07g12230
OsAffx.22438.1.S1_at--383--3812Chr07:6851293..6851317 (25 bp)
CTCCGGTCAGCGAACACACTGGAAA
LOC_Os07g12230
OsAffx.22438.1.S1_at--203--2192Chr07:6851306..6851330 (25 bp)
ACACACTGGAAAGGAACACATTGAA
LOC_Os07g12230
OsAffx.22438.1.S1_at--707--2272Chr07:6851400..6851424 (25 bp)
AAATCCACCAAATCGAGTCACCTCC
LOC_Os07g12230
OsAffx.22438.1.S1_at--804--5072Chr07:6851521..6851545 (25 bp)
GCACATCCGCAAGATGGACTAACCT
LOC_Os07g12230
OsAffx.22438.1.S1_at--375--552Chr07:6851525..6851549 (25 bp)
ATCCGCAAGATGGACTAACCTCGAC
LOC_Os07g12230
OsAffx.22438.1.S1_at--311--4092Chr07:6851546..6851570 (25 bp)
CGACCGATTCAGGAACAGAAGATGA
LOC_Os07g12230
OsAffx.22438.1.S1_at--11--9632Chr07:6851554..6851578 (25 bp)
TCAGGAACAGAAGATGACAAGCAGC
LOC_Os07g12230
OsAffx.22438.1.S1_at--496--1492Chr07:6851576..6851600 (25 bp)
AGCAACGGCCACCGGCACGAGCAAG
LOC_Os07g12230
OsAffx.22438.1.S1_at--125--7652Chr07:6851613..6851637 (25 bp)
GGGAGACAACACCAATCCAAAGAGA
LOC_Os07g12230
OsAffx.22438.1.S1_at--502--5612Chr07:6851617..6851641 (25 bp)
GACAACACCAATCCAAAGAGAACAA
LOC_Os07g12230
Target Sequence 
TGACGTGGACGCAGATCGCGCAGAGCTCCGTCTCATCCTCCTCGGCATCCCCGACCACCAGCGCGCAAATCCCACCCATC
ATCGTCGGCTCCTCCTCCGGTCAGCGAACACACTGGAAAGGAACACATTGAAGAAGANACCGAAAGAAGCAGTCACAACA
GAGGAAAAAGTAACTGAACCGGGGGAGAAACAGCTCTCCCCAAATCCACCAAATCGAGTCACCTCCAACANAGAATCAGG
ANCAACAAAGGGGAAGAAGAGACTACCGGGAGGGGAACAACACNCCCCCNCCCCNNNNNNANANNANNANANANNNNNAA
CAGCACATCCGCAAGATGGACTAACCTCGACCGATTCAGGAACAGAAGATGACAAGCAGCAACGGCCACCGGCACGAGCA
AGCCACCAGCGACGGGGAGACAACACCAATCCAAAGAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis