Browse Element(s) Details


OsAffx.28409.1.S1_at

Description gb:NM_186638.1
DB_XREF= gi:34900361
GEN=OJ1118_B03.11
TID=OsAffx.28409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1118_B03.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g122407/11EF hand family protein
LOC_Os01g563001/11expressed protein
LOC_Os02g312201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28409.1.S1_at--195--8211Chr07:6855017..6855041 (25 bp)
GGAAGGTTATTTAGCGCAATTGCAA
LOC_Os07g12240
OsAffx.28409.1.S1_at--802--4111Chr07:6855031..6855055 (25 bp)
CGCAATTGCAAGGTTCTTAGCGCAT
LOC_Os07g12240
OsAffx.28409.1.S1_at--120--5191Chr07:6855038..6855062 (25 bp)
GCAAGGTTCTTAGCGCATGACGATA
LOC_Os07g12240
OsAffx.28409.1.S1_at--1051--3651Chr07:6855046..6855070 (25 bp)
CTTAGCGCATGACGATAGTGTTATC
LOC_Os07g12240
OsAffx.28409.1.S1_at--182--7411Chr07:6855063..6855087 (25 bp)
GTGTTATCAACTCTATGGTCGTGGA
LOC_Os07g12240
OsAffx.28409.1.S1_at--573--9711Chr07:6855069..6855093 (25 bp)
TCAACTCTATGGTCGTGGACAACGA
LOC_Os07g12240
OsAffx.28409.1.S1_at--846--4313Chr07:6855101..6855125 (25 bp)
CCTTCTTCGCAGTTGCTTGGAGGAG
LOC_Os07g12240
OsAffx.28409.1.S1_at--778--5351NONE
GAAGATGCAGATGGTTGTGCCTTAT
NONE
OsAffx.28409.1.S1_at--947--5251Chr07:6858791..6858815 (25 bp)
GAATCGAGGGAGTATTGGTCATTTT
NONE
OsAffx.28409.1.S1_at--166--7651Chr07:6858798..6858822 (25 bp)
GGGAGTATTGGTCATTTTGTCAACA
NONE
OsAffx.28409.1.S1_at--1118--7811NONE
GGTCATTTTGTCAACAGGCGTCTGC
NONE
Target Sequence 
GGAAGGTTATTTAGCGCAATTGCAAGGTTCTTAGCGCATGACGATAGTGTTATCAACTCTATGGTCGTGGACAACGACCC
TCCTCCTTCTTCGCAGTTGCTTGGAGGAGGGGTGTCATGCTTTGATGCAATGACTGTCACAACGAGGTTAGGCCTCAGGT
GGCAAAGGAGTGGGGAGGCCGCCATGGAGTGCCAAGGGTGTGACATCCCTATGGATGCTACCGTGGATGAGCTGTTGGAT
AGGAAGATGGCGAGCGAGGGTGAGCTTAAGGATGCCTTTTATGTGTTCGATCGCAATGAGGATGGCTTCATATGTGCCTC
GGAACTGTGGAGCGTGATGAGGAGGCTAGGGTTCAAAGAAGGGCAAAGGTATGAGGACTGTATGAGGATGATCCACACCT
TCGATGAGGACAGAGATGGGAGGATCAGCTACTTAGAATTTAGAAGGATGATGGAAGATGCAGATGGTTGTGCCTTATAT
TTTGGAATCGAGGGAGTATTGGTCATTTTGTCAACAGGCGTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis